Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00763 ATGAGTATTGTGTATACTCATGCTCTCAACTACTCTCAAGTTGAATCAAGGAAGAACAATGAAATTGATTCAAATATTGGATACTCACAAACACAACAATATTGTCACCAAAACTCATTGCTTTCAAGCCTTATAGACACAAGAAATGGTTTTATGAATGAAGAAACTTTCAGAAATGATAATGATCAACATCAGAAACATTATTCTCCCTCCACAAGTTCAGACATGGAAACAATGTTTACAAATTCTCAACATTTGTTAGTGAAACAAGAAGAGAATGACCCTTTTTCACAAGGAATACAATACAATGGTTACTCTAATGAATCTCCCAGTCAGATGATTTACCAAACTCACCAGAATCATGGATTGCTTAGTGATTTTGAGGCTTCATTTAGTGCTGTGAGTTCCTTGGATTCAGAGAATTATGACACAGAAACTAAAATAGCTTCTTCTATGAATTGCTCCAATCTCATTAGGCACAACAGTTCACCTGCTGAGTTTTTCTCCAATTATTCACTTCATAATGGTATTGGAACTAAAAACATTGGAAATGATAATGCTAGCACTAAATCTTACATGCCTAACTTCATCAGTGACTATTGGGCTACTTCTACATTCACTGCCCCAAAAACGTCCATTAATAATGGTCAAATCTTCTTTTCCACTTCAAATACTTTGGAAACTCAGGATTTAGACTTTGGATACCAAAAACATGGTTTGAGGCACCAATTGAGTCTTCCAAGCTCTTCTACAAAGATGACTAGTATGGACAAGTATTTTCACATTCAAGGATCTGTTCCATGTAAAATTCGCGCCAAAAGAGGCTTTGCCACCCACCCAAGAAGCATTGCAGAGAGGGAAAGAAGAATAAGAATTAGTGCAAAAATCAAGAAATTGCAAGACCTTTTCCCAAATTCAGATAAGCAAACAAGTACAGCTGATATGTTGGATGTAGCAGTTGACTACATTAAAGACCTCAGGAAACAACTTAAGATATTATCAGACACTAAGGCAAAGTGCAGCTGTACAAGTAATTAG 1038 0.3574 MSIVYTHALNYSQVESRKNNEIDSNIGYSQTQQYCHQNSLLSSLIDTRNGFMNEETFRNDNDQHQKHYSPSTSSDMETMFTNSQHLLVKQEENDPFSQGIQYNGYSNESPSQMIYQTHQNHGLLSDFEASFSAVSSLDSENYDTETKIASSMNCSNLIRHNSSPAEFFSNYSLHNGIGTKNIGNDNASTKSYMPNFISDYWATSTFTAPKTSINNGQIFFSTSNTLETQDLDFGYQKHGLRHQLSLPSSSTKMTSMDKYFHIQGSVPCKIRAKRGFATHPRSIAERERRIRISAKIKKLQDLFPNSDKQTSTADMLDVAVDYIKDLRKQLKILSDTKAKCSCTSN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00763 345 Gene3D - 278 344 IPR036638 GO:0046983
Vifa4g00763 345 FunFam Transcription factor bHLH130 family 277 345 - -
Vifa4g00763 345 SMART finulus 282 332 IPR011598 GO:0046983
Vifa4g00763 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 340 IPR036638 GO:0046983
Vifa4g00763 345 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 83 340 - -
Vifa4g00763 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 276 326 IPR011598 GO:0046983
Vifa4g00763 345 Pfam Helix-loop-helix DNA-binding domain 282 326 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00763 Vifa-Chr4 223913019 223914639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00763 155 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 43.836 6.30e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g00763 HLH 2.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00763 - - psat:127075773 432.18