Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00762 ATGAGTATTTTGTATACTCATGCTCTCAACTATTCTCAAGTTGAGTCAAGCCTTAATGATACAAGAAATGGTTTTATGAATGAAGAAACTTTCAGAAATGATAATCATCATCATCATAATCAGCAATATTATTCTCCCTCCACAAGTTCAGACATGGAAACAATGTTTACAAATTCTCAACATTTGTTAGTGAAACAAGAAGAGAATGACCCTTTTTCACAAGGAATACAATATAATGGTTACTCTAATGAATCTCCAAGTCACATGATTTACCAAACTCACCAGAATCATGGATTGCTTAATGATTTTGAGGCTTCATTTAGTGCTGTGAGTTCCTTGGATTCAGAGAATTATGACACAGAAACTAAAATAGGTTCTTCTATGAATTGCTCCAATCTCATTAGGCACAACAGTTCACCTGCTGAGTTTTTCTCCAATTATTCACTTCATAATGGTATTAGAACTAAAAACATTGGAAATGATAATGCTAGCACTAAATCTTACATGCCTAACTTCATCAATGACTATTGGGCTACTTCTACATTCACTGCCCCTAAAACGTACATTAATAATGGTCAAATCTTCTTTTCCACTTCAAATACTTTGGAAACTCAGGATTTAGACTTTGGATACCAAAAACATGGTTTGAGGCACCAATTGAGTCTTCCAAGCTCTTCTACAAAGATGACTAGTATGGACAAGTATTTTCACATTCAAGGATCTGTTCCATGTAAAATTCGCGCCAAAAGAGGCTTTGCCACCCACCCAAGAAGCATTGCAGAGAGGGAAAGAAGAATAAGAATTAGTGCAAGAATCAAGAAATTACAAGACCTTTTCCCAAACTCAGATAAGCAAACAAGTACAGCTGATATGTTGGATGTAGCAGTTGAGTACATTAAAGACCTCAGGAAACAACTTAAGATATTATCAGACACTAAGGCAAAGTGCAGCTGTACAAGTAATTAG 966 0.353 MSILYTHALNYSQVESSLNDTRNGFMNEETFRNDNHHHHNQQYYSPSTSSDMETMFTNSQHLLVKQEENDPFSQGIQYNGYSNESPSHMIYQTHQNHGLLNDFEASFSAVSSLDSENYDTETKIGSSMNCSNLIRHNSSPAEFFSNYSLHNGIRTKNIGNDNASTKSYMPNFINDYWATSTFTAPKTYINNGQIFFSTSNTLETQDLDFGYQKHGLRHQLSLPSSSTKMTSMDKYFHIQGSVPCKIRAKRGFATHPRSIAERERRIRISARIKKLQDLFPNSDKQTSTADMLDVAVEYIKDLRKQLKILSDTKAKCSCTSN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00762 321 SMART finulus 258 308 IPR011598 GO:0046983
Vifa4g00762 321 Gene3D - 254 320 IPR036638 GO:0046983
Vifa4g00762 321 FunFam Transcription factor bHLH130 family 253 321 - -
Vifa4g00762 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 255 316 IPR036638 GO:0046983
Vifa4g00762 321 MobiDBLite consensus disorder prediction 31 50 - -
Vifa4g00762 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 302 IPR011598 GO:0046983
Vifa4g00762 321 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 89 316 - -
Vifa4g00762 321 Pfam Helix-loop-helix DNA-binding domain 258 302 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00762 Vifa-Chr4 222923561 222925056 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00762 131 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 42.411 6.59e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g00762 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00762 - - psat:127075773 444.506