Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00748 ATGGAAGGAAGAGAAGGTATCAATCCTGGGGTAACAGTTATAGGTGCTGAAGCTCCATCAGCTTATCATGTAGCACCAAGGACTGAAGCTCCAAACCAGGTTCATAACCCCGAAGCAGCAGTGGTTGCGGCAGGTGCTGTTGCCGCTGATGCTTCTGCTATCATTGTCTCACCGGTGAGTGTAGGTTTGGATGGATCGGTCAAGAAGAAAAGGGGTAGACCAAGGAAATACGGGCCAGATGGGTCTGTCAACATGCCGTTGTCACCATTGCCTATCTCATCTTCGGCTCCCCCTTCTACTAATGACTTCTCGTCCGTGAAGCGAGGGAAACCACATGGGATGGAATACAAGAGGGCGAAAAAAGTTGTGATGGATCATCTTGGTGAGATGAATGGACACGCCGACGGTACAAACTTTATGCCGCATTTCATCACTGTCAATGCTGGCGAGGACATTACAAATAAGGTGATATCATTTTCGCAACAAGGTCCGCGGGCAATATGTGTCTTATCGGCTAATGGTGTGATTTCAAATGTTACACTTCGTCATCCAGACTCTTCTGGGGGTACTTTGACTTACGAGGGTCGTTTTGAGATACTTTCCTTGGCTGGATCATTCATGCCTACTGATAACCAAGGAACAAGAAGCAGGGCAGGTGGAATGAGCGTCTCGCTTGCAAGCCCTGATGGCCGCGTTGTAGGCGGTGGAGTTGCTGGTGTTCTTATAGCTGCCACTCCTGTGCAGGTGGTGGTGGGAAGTTTTCTACCAAGCGGCCAAGATCAGAAACTAAAGAAGCCAAAGTCTGCTGATTATGCAGCAGCCACATTTACTCGAGCCACTGAAGTATCCGCAGAACCACCACCAGCCCAAACTTTTGATGCTGAAAAAGAGGATATCTTGAGGGACAGTGGTGGACGTGCACTTCAAAATATCGGAGCCCTTAACTCAAGTTTAACCTCTCCTCCGCCGCCCACCGCTTTTCGAAGAGAAAACTGGGTCAACATGCACGCCATGCCGGACACAAGAAAGTCCCCTACTGATATAAACATATCTTTGCCTGATAGTTAA 1068 0.4869 MEGREGINPGVTVIGAEAPSAYHVAPRTEAPNQVHNPEAAVVAAGAVAADASAIIVSPVSVGLDGSVKKKRGRPRKYGPDGSVNMPLSPLPISSSAPPSTNDFSSVKRGKPHGMEYKRAKKVVMDHLGEMNGHADGTNFMPHFITVNAGEDITNKVISFSQQGPRAICVLSANGVISNVTLRHPDSSGGTLTYEGRFEILSLAGSFMPTDNQGTRSRAGGMSVSLASPDGRVVGGGVAGVLIAATPVQVVVGSFLPSGQDQKLKKPKSADYAAATFTRATEVSAEPPPAQTFDAEKEDILRDSGGRALQNIGALNSSLTSPPPPTAFRRENWVNMHAMPDTRKSPTDINISLPDS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00748 355 MobiDBLite consensus disorder prediction 87 106 - -
Vifa4g00748 355 FunFam AT-hook motif nuclear-localized protein 1-like 141 272 - -
Vifa4g00748 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 254 IPR005175 -
Vifa4g00748 355 ProSiteProfiles PPC domain profile profile. 136 277 IPR005175 -
Vifa4g00748 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 139 258 - -
Vifa4g00748 355 CDD DUF296 141 254 IPR005175 -
Vifa4g00748 355 Gene3D - 141 270 - -
Vifa4g00748 355 MobiDBLite consensus disorder prediction 64 112 - -
Vifa4g00748 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 315 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00748 Vifa-Chr4 220506048 220508486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00748 6 284 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 54.098 6.28e-89 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00748 - - psat:127075781 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00748 4 220506048 220508486 Vifa4g00748 4 220506048 220508486 ECH
Vifa5g01393 5 401509850 401511264 Vifa4g00748 4 220506048 220508486 PCT