Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00746 ATGGATTATTATGGAGGAAAGATTGGTGGAAGTGATCAAAGAGGTAGTGGTGGTGGTGGGCCATGTGGTGCTTGCAAGTTTTTAAGAAGAAAGTGTGTAAAAGGTTGCATATTTGCACCCTATTTTGATTCGGACCAAGGAACGGTTCATTTTGCAGCGGTTCATAAGGTGTTTGGTGCTAGTAATGCCTCTAAGTTACTCATGCGTATTCCGGTTCATAAACGTCTTGATGCTGTTGTTACTCTTTGTTATGAAGCTATTGCTAGGGCTAGAGACCCTGTTTATGGTTGTGTTGCTCATATCTTTGCACTTCAACAACAGGTCATGAGTTTGCAGACAGAGTTAACCTATGTTCAAGGAACTCTTGCGACGATGCAGCACGTCCCGGTCTCGATATCTCCATCTCTTCCGACTCCGCAAAACTCTTCGCGAACTCTACATTCTTCCTCGGATCACCTAGGAACAAATGGAGACATGTTGAGTGCCTCTAATTACATGTCCATGCACATTGATCCTCATCAATTGGACTTGAGTAACTTCTTCAATCAATCAGATCAACAACAACTTGAGGATGATGAACTCCAAGCTTTGGCTAGAGAATTTGTCTCTAGGTACTTGCCTGGAGTAAGATTTCAGCCTTCTAATTCTAACTAA 654 0.4251 MDYYGGKIGGSDQRGSGGGGPCGACKFLRRKCVKGCIFAPYFDSDQGTVHFAAVHKVFGASNASKLLMRIPVHKRLDAVVTLCYEAIARARDPVYGCVAHIFALQQQVMSLQTELTYVQGTLATMQHVPVSISPSLPTPQNSSRTLHSSSDHLGTNGDMLSASNYMSMHIDPHQLDLSNFFNQSDQQQLEDDELQALAREFVSRYLPGVRFQPSNSN 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00746 217 PANTHER LOB DOMAIN CONTAINING PROTEIN 18 167 - -
Vifa4g00746 217 MobiDBLite consensus disorder prediction 133 154 - -
Vifa4g00746 217 Pfam Lateral organ boundaries (LOB) domain 21 119 IPR004883 -
Vifa4g00746 217 ProSiteProfiles LOB domain profile. 20 122 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00746 Vifa-Chr4 218551700 218555602 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00746 16 215 AS2 family AT4G00210 52.727 6.96e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa4g00746 LOB 2.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00746 - - tpra:123898243 344.354