Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00740 ATGAGTGTAAACTCTGGTTGTAGCGGTAACGGGGGTGGTTGTAGTGGCGGTGGAAGTGGTGGAAATGGTGGTGCAGGTGGTCCGTGCGGCGCGTGCAAGTTTTTGAGGAGGAAGTGTATCCCTAGCTGTATATTTGCGCCTTACTTTGATTCGGAGCAAGGGGCTTCACAGTTTGCGGCGGTTCACAAGGTTTTTGGTGCTAAAAACGTTTCGAAGTTGTTACGAAATGTTCCGGTGCACAAGCGTTTTGATGTTGTCATCACAGTTTGTTATGAAGCTCAAGCAAGGTTGAGAGATCCTGTTTATGGCTGTGTTTCTCATATCATTACTCTTCAGCAACAGGTGATGAGTTTACAAGCAGAACTCGCCTACTTACAAGGCCACCTAGCCACATATCAAGTCCCTCAACCACCACCACAAGCACTTCCAATGGTCTCTTCTTCATCCATTCCACCCACATATGACTTATCTTCACTCTTTGATCCTATGGCACAAACTTCTTCATGGGCCATGCATCAAAGGACTAATGAGCCTCGTCAATATTTGGGTAGCGGCACATCAACTACAAGTAGCAATAATGATGGTGGTCTTCAAATATTGGCAAGAGAGCTTTTGCATAGATATGGATCTGCTCCGTCATCTCATTCTCTTTCCAAATGA 660 0.4561 MSVNSGCSGNGGGCSGGGSGGNGGAGGPCGACKFLRRKCIPSCIFAPYFDSEQGASQFAAVHKVFGAKNVSKLLRNVPVHKRFDVVITVCYEAQARLRDPVYGCVSHIITLQQQVMSLQAELAYLQGHLATYQVPQPPPQALPMVSSSSIPPTYDLSSLFDPMAQTSSWAMHQRTNEPRQYLGSGTSTTSSNNDGGLQILARELLHRYGSAPSSHSLSK 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00740 219 Pfam Lateral organ boundaries (LOB) domain 28 126 IPR004883 -
Vifa4g00740 219 ProSiteProfiles LOB domain profile. 27 129 IPR004883 -
Vifa4g00740 219 PANTHER LOB DOMAIN CONTAINING PROTEIN 25 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00740 Vifa-Chr4 217107707 217108960 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00740 31 206 AS2 family AT4G00220 59.043 5.10e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa4g00740 LOB 5.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00740 K21994 - gmx:100798425 278.485