Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00738 ATGAGTGTAAACTGTGATTGTAGCGGTAGCGGGGGTGGTTGTAGTGGCGGTGGAAGTGGTGGAAATGGTGGTGCAGGTGGTCCGTGCGGCGCGTGCATGTTTTTGAGGAGGAAGTGTATCCCGAGCTGTATATTTGCGCCTTACTTTGATTCGGAGCAAGGGGCTTCACAGTTTGCGGCGGTTCACAAGGTTTTTGGTGCTAGTAACGTTTCGAAGTTGTTACGAAATGTTCCGGTGCACAAGCGTTTTGATGTTGTCATCACAGTTTGTTATGAAGCTCAAGCAAGGTTGAGAGATCCTGTTTATGGTTGTGTTTCTCATATCATTACTCTTCAGCAACAGGTGATGAGTTTACAAGCAGAACTCGCCTACTTACAAGGCCACCTAGCCACATATCAAGTCCCTCAACCACCACCACAAGCACTTCCAATGGTCTCTTCAACCATCCCACCCACATATGACTTTTCTTCACTCTTTGATCCTATGACACAAACTTCTTCATGGGCCATGCACCAAAGGCCTAATGAGACTCGTCAATATTTGGGTAGTGGCACATCAATAAGTAGCAATAATGGTGGTGATCTTCAAGTATTGGCAAGAGAGCTTTTGCATAGATATGGATCTACTCCATCATCTCATTCTCTATCCAAATGA 654 0.4557 MSVNCDCSGSGGGCSGGGSGGNGGAGGPCGACMFLRRKCIPSCIFAPYFDSEQGASQFAAVHKVFGASNVSKLLRNVPVHKRFDVVITVCYEAQARLRDPVYGCVSHIITLQQQVMSLQAELAYLQGHLATYQVPQPPPQALPMVSSTIPPTYDFSSLFDPMTQTSSWAMHQRPNETRQYLGSGTSISSNNGGDLQVLARELLHRYGSTPSSHSLSK 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00738 217 Pfam Lateral organ boundaries (LOB) domain 28 126 IPR004883 -
Vifa4g00738 217 ProSiteProfiles LOB domain profile. 27 129 IPR004883 -
Vifa4g00738 217 PANTHER LOB DOMAIN CONTAINING PROTEIN 25 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00738 Vifa-Chr4 216898964 216900105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00738 31 204 AS2 family AT4G00220 58.824 9.16e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa4g00738 LOB 2.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00738 K21994 - gmx:100798425 285.804