Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00737 ATGAGTGTAAACTGTGATTGTAGCGGTAGCGGGGGTGGTTGTAGTGGCGGTGGAAGTGGTGGAAATGGTGGTGCAGGTGGTCCGTGCGGCGCGTGCATGTTTTTGAGGAGGAAGTGTATCCCGAGCTGTATATTTGCGCCTTACTTTGATTCGGAGCAAGGGGCTTCACAGTTTGCGGCGGTTCACAAGGTTTTTGGTGCTAGTAACGTTTCGAAGTTGTTACGAAATGTTCCGGTGCACAAGCGTTTTGATGTTGTCATCACAGTTTGTTATGAAGCTCAAGCAAGGTTGAGAGATCCTGTTTATGGTTGTGTTTCTCATATCATTACTCTTCAGCAACAGGTGATGAGTTTACAAGCACAACTCGCCTACTTACAAGGCCACCTAGCCACATATCAAGTCCCTCAACCACCACCACAAGCACTTCCAATGGTCTCTTCAACCATCCCACCCACATATGACTTATCTTCACTCTTTGATCCTATGGCACAAACTTCTTCATGGGCCATGCACCAAAGGCCTAATGAGCCTCGTTAA 537 0.4749 MSVNCDCSGSGGGCSGGGSGGNGGAGGPCGACMFLRRKCIPSCIFAPYFDSEQGASQFAAVHKVFGASNVSKLLRNVPVHKRFDVVITVCYEAQARLRDPVYGCVSHIITLQQQVMSLQAQLAYLQGHLATYQVPQPPPQALPMVSSTIPPTYDLSSLFDPMAQTSSWAMHQRPNEPR 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00737 178 ProSiteProfiles LOB domain profile. 27 129 IPR004883 -
Vifa4g00737 178 PANTHER LOB DOMAIN CONTAINING PROTEIN 25 136 - -
Vifa4g00737 178 Pfam Lateral organ boundaries (LOB) domain 28 126 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00737 Vifa-Chr4 216734724 216735802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00737 31 175 AS2 family AT4G00220 62.658 3.09e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa4g00737 LOB 1.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00737 K21994 - gmx:100798425 252.677