Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00734 ATGGATCAAGTAAGTGCTCAAGGTCGTCCTCTTCCACCTCCTTTTCTCACTAGAGACCTCCATCTTCATCCTCACCATCAATTCCACACCAACCACCAAGGCAACGATGAAGAACAACAAAGTGGTAATGGCAACATGAGCCGAGGTCAAAAGCGAGAACGAAACAACAACGACGACATCAACAACACTCCAACCGGCGGAGATGGAAAAGACGATGGTGGAAGTGGAAGCGGCGGCGGAGGTAGTGGTGGTGAGATGGGGAGAAGACCAAGAGGAAGACCTGCAGGCTCGAAAAACAAACCAAAACCGCCCATCATCATCACAAGGGATAGCGCGAACGCACTAAGATCCCATGTGATGGAAGTCGCCAACGGATGCGACATCATGGAGAGTGTGACGGTCTTTGCGCGGAGGAGGCAGCGTGGTGTCTGCATCCTCAGCGGAAGTGGGACCGTCACAAACGTGACTCTCCGTCAACCAGCATCGCCTGGCGCGGTAGTCACACTTCACGGAAGATTCGAGATATTATCTTTATCCGGCTCATTCCTTCCGCCACCTGCTCCACCAGCAGCGTCAGGATTAGCCATATATCTTGCTGGTGGACAAGGACAGGTTGTCGGCGGAAGCGTGGTGGGACCGCTGTTGGCTTCCGGTCCCGTTGTTATCATGGCAGCTTCCTTTGGAAATGCAGCATATGAAAGATTACCTCTAGAAGATGAAGAAACACCCGTGAATGTTCAAGGAGGTGGAGGATTAGGATCACCCGGAACTTTGAGTTCTCAACAGCAGCAACAGCAGCAACAGCAACAGCAACAACAACTTGTTCAAGATCCTAACAACACTTCATCACTTTTCCATGGTGTTCCTCAAAATCTTCTCAATTCATGCCAATTACCAGCTGAAGGTTATTGGGGTGGAAGTGTTCGTCCTCCATTTTAA 939 0.5048 MDQVSAQGRPLPPPFLTRDLHLHPHHQFHTNHQGNDEEQQSGNGNMSRGQKRERNNNDDINNTPTGGDGKDDGGSGSGGGGSGGEMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEVANGCDIMESVTVFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEETPVNVQGGGGLGSPGTLSSQQQQQQQQQQQQQLVQDPNNTSSLFHGVPQNLLNSCQLPAEGYWGGSVRPPF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00734 312 MobiDBLite consensus disorder prediction 1 106 - -
Vifa4g00734 312 MobiDBLite consensus disorder prediction 242 288 - -
Vifa4g00734 312 PIRSF ESCAROLA 17 312 IPR014476 GO:0003680
Vifa4g00734 312 MobiDBLite consensus disorder prediction 34 50 - -
Vifa4g00734 312 ProSiteProfiles PPC domain profile profile. 112 250 IPR005175 -
Vifa4g00734 312 MobiDBLite consensus disorder prediction 19 33 - -
Vifa4g00734 312 FunFam AT-hook motif nuclear-localized protein 115 242 - -
Vifa4g00734 312 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 292 IPR014476 GO:0003680
Vifa4g00734 312 MobiDBLite consensus disorder prediction 252 288 - -
Vifa4g00734 312 Pfam Plants and Prokaryotes Conserved (PCC) domain 116 228 IPR005175 -
Vifa4g00734 312 CDD DUF296 116 183 IPR005175 -
Vifa4g00734 312 SUPERFAMILY AF0104/ALDC/Ptd012-like 112 244 - -
Vifa4g00734 312 Gene3D - 115 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00734 Vifa-Chr4 213343860 213344798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00734 1 312 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 64.634 2.56e-91 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00734 - - cill:122286699 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00734 4 213343860 213344798 Vifa4g00734 4 213343860 213344798 ECH