Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00728 ATGTCGGTTACTCTGCACACAAACCTAGGTGATATCAAGTGCGAAATCTTCTGCGACGAAGTCCCTAAAACCTCCGAGAACTTTTTAGCGCTGTGTGCGAGTGGTTACTATGATGGGACTGTATTTCACCGCAATATTAAAGGCTTTATGATTCAAGGTGGAGACCCAACTGGTACTGGCAAAGGAGGGACTAGTATATGGGGCAAGAAATTCAACGATGAGATAAGAGAATCTTTGAAGCACAATGCAAGGGGAATGTTGTCAATGGCTAACAGTGGTCCAAATACTAATGGAAGTCAGTTCTTCATAAGTTATGCAAAGCAGCCGCATTTGAATGGACTATACACTGTGTTTGGAAGAGTAATTCATGGATTTGAAGTTCTTGATCTCATGGAAAAGACTCCAACCGGGGCACAAGATCGACCACTTGCAGAGATAAGGCTCAATCGTGTAACAATGCATTCTAATCCACTTGCAGGTTAG 483 0.4286 MSVTLHTNLGDIKCEIFCDEVPKTSENFLALCASGYYDGTVFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGMLSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKTPTGAQDRPLAEIRLNRVTMHSNPLAG 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00728 160 CDD Cyclophilin_PPIL3_like 1 152 - -
Vifa4g00728 160 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 153 IPR002130 GO:0000413|GO:0003755
Vifa4g00728 160 FunFam Peptidyl-prolyl cis-trans isomerase 1 160 - -
Vifa4g00728 160 PIRSF Peptidylpro_ismrse 1 157 IPR024936 GO:0003755
Vifa4g00728 160 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755|GO:0006457
Vifa4g00728 160 Gene3D - 1 160 IPR029000 -
Vifa4g00728 160 SUPERFAMILY Cyclophilin-like 1 157 IPR029000 -
Vifa4g00728 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Vifa4g00728 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413|GO:0003755
Vifa4g00728 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Vifa4g00728 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Vifa4g00728 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Vifa4g00728 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 153 IPR044666 -
Vifa4g00728 160 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 152 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00728 Vifa-Chr4 212204448 212220452 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00728 3 157 U-box Gene Family AT5G67530 54.194 6.19e-56 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00728 K12734 - mof:131166071 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00728 4 212204448 212220452 Vifa4g00728 4 212204448 212220452 ECH