Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00724 ATGGTTGATAATTCGAAACGGCAATGGTCCATCAACGATTTCGAGATCGGAAAACCACTCGGAAAAGGCAAATTCGGTAGAGTCTACGTCGCCAGAGAAATCAAGAGTAAATATGTGATTGCGTTGAAGGTTATCTATAAGGAACAACTGGAAAAGTATAACATTTTGCATCAACTAAGGAGGGAAATGGAGATACAGATAAGTCTTAAACATCCAAACATCTTGCGTCTCTATGGTTGGTTTTACGATGACGAGCGTGTTTTTTTGATTCTTGAATATGCTCATAATGGTGAGCTATACAAGGAGCTTCGCAAAAGAGGTCATTTCTCAGAGAAGCAAGCTGCAACGTACATTTTAAGCCTCACAAAGGCATTGGCATATTGTCACGAGAAGCATGTTATTCACAGAGATATCAAGCCTGAAAACTTGTTGCTTGACCATGAGGGTCGTCTTAAGATTGCCGACTTTGGTTGGTCTGTACAATCTAAAAACAAAAGACAAACCATGTGTGGAACATTGGATTACCTAGCTCCTGAGATGGTAGAAAACAGAGGTCATGATTATGCCATTGATAACTGGACTCTAGGTGTCCTTTGTTATGAGTTCCTCTATGGTGTTACTCCATTTGAGGCTGAGGGTCAAAATGAAACCTTCCAAAGGATAAGAAATGTTGATCTGAGCTTCCCTCATACCCCTCTTATTTCTAAAAATGCCAAACATCTGATAAGTCGGCTCCTGATAAAAGATTCTTCAAAAAGGCTCCCACTTCAGAAGATAATGGAGCATCCTTGGATAAAAGAAAACACCACTGATATGGCTATCGGCGAGTAG 831 0.4031 MVDNSKRQWSINDFEIGKPLGKGKFGRVYVAREIKSKYVIALKVIYKEQLEKYNILHQLRREMEIQISLKHPNILRLYGWFYDDERVFLILEYAHNGELYKELRKRGHFSEKQAATYILSLTKALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSKNKRQTMCGTLDYLAPEMVENRGHDYAIDNWTLGVLCYEFLYGVTPFEAEGQNETFQRIRNVDLSFPHTPLISKNAKHLISRLLIKDSSKRLPLQKIMEHPWIKENTTDMAIGE 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00724 276 Gene3D Phosphorylase Kinase; domain 1 2 96 - -
Vifa4g00724 276 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 3 269 IPR030616 GO:0004672
Vifa4g00724 276 FunFam Serine/threonine-protein kinase ark1 6 275 - -
Vifa4g00724 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Vifa4g00724 276 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Vifa4g00724 276 FunFam Aurora kinase A 6 97 - -
Vifa4g00724 276 SUPERFAMILY Protein kinase-like (PK-like) 6 270 IPR011009 -
Vifa4g00724 276 CDD STKc_Aurora 13 266 - -
Vifa4g00724 276 SMART serkin_6 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00724 276 ProSiteProfiles Protein kinase domain profile. 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00724 276 PIRSF ILK 2 263 - -
Vifa4g00724 276 Pfam Protein kinase domain 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00724 276 Gene3D Transferase(Phosphotransferase) domain 1 97 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00724 Vifa-Chr4 211303507 211305713 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00724 6 270 CBL-interacting serine-threonine protein kinases AT5G10930 38.235 6.18e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Vifa4g00724 Pkinase 1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00724 K08850 - tcc:18614274 471.085