Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00713 ATGCCATCGCGTCCGCCTCCTCAACCACAGCACCACCACAACCGCCACCGTGATATGATAATCGCCGGCTGCATCGCCGCCGCAGTTTTCCTAACAGCAGTGATAATCTCTGCAGCAATCTTCATCTACCGTAAACTCTCACACAACCGAACGACGCCGTTTGAGCAAAACCAAAGAAGATTCTCATTCTCAGTTCTCCGTCGCGCCTCGAACTCGTTCTCGGCTTCGACTCGCCTCGGCCACGGCGGCTTCGGTTCGGTCCACAAAGCCACGCTACCGACCGGAGAAACTGTCGCTTTGAAAGTAATGGATTCGCCAGGTTCGATTCAAGGAGAGAGAGAGTTTCATAACGAGCTTTCTCTGTGTTCGAATCTTCGGTCTCCTTTCATTCTTTCGCTTCTCGGATACTCTTCGGACCGCTCTGGGAGGAAGCTTGTTTTGGTTTATGAACTCATGGAGAACCGGAGTCTTCAGGACGCGCTGTTAGACCGGAGGTGTCCGGAGTTAATGTGTTGGTTGAATCGGTTCGATGTGGCGGTTTCGGTTGCGAAGGGACTTGAGTATCTTCATCATAACTGTGATCCTCCGGTGATTCATGGTGATGTTAAACCTAGTAATGTTCTTTTGGATCGTGAATTTAGGGCTAAGATTGGGGATTTTGGACTTGCTAGGGTTAAGAGTTTGGAGGATTCTGGAATGATGATGGTGGAGGAGATTTGTGAGAAGAAGAAGAGAGATGATGTTGTTGTTAGTGTTGGTGTTGAGGATTGTAGTTCTGTTTCTGTTGTTGAGGAATCAGAGAGTGTTGTTACGAATACGACGGTTGGATTTGATCGGTCGCCAGAGAGTTCTAATGTGAGGGTTTTGGATTCAGATGCTTCACCGGAGGTGGAGGTGGGGGTTGTGTCGCCTGAGATGAGTGGGGTTGAGAAATTGAGTGTTTTGTCTGATGGTTGTTTTGATAAGTTTAGTGTTGATAGTGGGAATCAGAGGAAGAGAGGTGGTGGGGGGTGTGTTCGTGGTGGTTCTGGGAGGGATTGGTGGTGGAAGCAAGAGAATAATGGGGGAGGATCTGAATCGGGGAGGGTGAAGGATTATGTTATGGAGTGGATTGGGAGTGAGATAAAGAAGGAGAGACCTAAGAGTAGTGAGTGGGTTGGTTCTGGGTCTTCGATTTGTTCGGGTGCTGGTGATGTGGCTGCGCCGTCCAAGGTGGATGGTAAGAAGAAACAGAGGAAGAAATTGGAATGGTGGGCTTCACTTGATGAGGAGAAGGTTAAGGGGAAGAAGAATAGAAAACCGAGGGAATGGTGGAAGGAGGAGTTTTGTGAGGAGCTTTCAAAGAAGAGTAGGAAGAAAAAGAGAAGCCTGGATTGTCGCGGAGAATCATGGTGGCAGAGAGACGAGGATATAGGCAGTGTGGCGGGGGTGAAGAAGAAAAAGAGGAAAAGTAAGAGTAGTAGAGGGAGTATTGATTGGTGGTTGGAAGGTTTAAGCGGCGACCTTAGGAATAATGGAAGGAGAAATAGTCAAGATTGGGGTAATGGTGATATACCAAAGAGTGGCGGAATTACTAGCACACCTAGTATGAGAGGAACCGTTTGTTACATTGCTCCTGAATATGGCGGCGGTGGACAATTATCTGAGAAGTGTGATGTGTATAGTTTCGGCGTTCTGCTTTTGGTTTTGGTTGCTGGAAGAAGACCACTTCAAGTAACAGCATCACCAATTTCAGAATTTGAGAGAGCAAATCTAATTTCATGGGCTAGACAACTTGCTCACAATGGGAAACTCTTAGATCTTGTTGATAGTTCTATTCATTCTTTGGACAAGGAACAAGCATTGCTTTGTATCACCATTGCATTGTTGTGTTTGCAGAGATCTCCTGGGAAAAGGCCTTCCATGAAAGAGATCGTTGGGATGCTTTCCGGTGAGGCTGACCCACCTCACTTACCCTTTGAATTCTCACCTTCACCACCCTCTAATTTCCCTTTCAAATCAAGAAAAAAAGCTAGGTGA 2019 0.47 MPSRPPPQPQHHHNRHRDMIIAGCIAAAVFLTAVIISAAIFIYRKLSHNRTTPFEQNQRRFSFSVLRRASNSFSASTRLGHGGFGSVHKATLPTGETVALKVMDSPGSIQGEREFHNELSLCSNLRSPFILSLLGYSSDRSGRKLVLVYELMENRSLQDALLDRRCPELMCWLNRFDVAVSVAKGLEYLHHNCDPPVIHGDVKPSNVLLDREFRAKIGDFGLARVKSLEDSGMMMVEEICEKKKRDDVVVSVGVEDCSSVSVVEESESVVTNTTVGFDRSPESSNVRVLDSDASPEVEVGVVSPEMSGVEKLSVLSDGCFDKFSVDSGNQRKRGGGGCVRGGSGRDWWWKQENNGGGSESGRVKDYVMEWIGSEIKKERPKSSEWVGSGSSICSGAGDVAAPSKVDGKKKQRKKLEWWASLDEEKVKGKKNRKPREWWKEEFCEELSKKSRKKKRSLDCRGESWWQRDEDIGSVAGVKKKKRKSKSSRGSIDWWLEGLSGDLRNNGRRNSQDWGNGDIPKSGGITSTPSMRGTVCYIAPEYGGGGQLSEKCDVYSFGVLLLVLVAGRRPLQVTASPISEFERANLISWARQLAHNGKLLDLVDSSIHSLDKEQALLCITIALLCLQRSPGKRPSMKEIVGMLSGEADPPHLPFEFSPSPPSNFPFKSRKKAR 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00713 672 Gene3D Phosphorylase Kinase; domain 1 37 151 - -
Vifa4g00713 672 MobiDBLite consensus disorder prediction 650 672 - -
Vifa4g00713 672 ProSiteProfiles Protein kinase domain profile. 73 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00713 672 Pfam Protein kinase domain 527 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00713 672 Pfam Protein kinase domain 75 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00713 672 SMART serkin_6 73 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00713 672 SUPERFAMILY Protein kinase-like (PK-like) 47 661 IPR011009 -
Vifa4g00713 672 MobiDBLite consensus disorder prediction 329 360 - -
Vifa4g00713 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Vifa4g00713 672 Gene3D Transferase(Phosphotransferase) domain 1 497 648 - -
Vifa4g00713 672 Gene3D Transferase(Phosphotransferase) domain 1 152 285 - -
Vifa4g00713 672 ProSitePatterns Protein kinases ATP-binding region signature. 79 101 IPR017441 GO:0005524
Vifa4g00713 672 MobiDBLite consensus disorder prediction 505 525 - -
Vifa4g00713 672 FunFam Os07g0541700 protein 152 240 - -
Vifa4g00713 672 PANTHER OS07G0586332 PROTEIN 4 672 IPR044576 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00713 Vifa-Chr4 208074681 208076699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00713 502 642 Receptor kinase-like Gene Family AT3G58690 34.899 8.83e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vifa4g00713 Pkinase 2.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00713 - - gmx:100814933 860.136