Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00695 ATGGGAAGAGGAAGAGTTGAATTGAAGAGGATAGAAAACAAAATAAACAGACAAGTAACTTTCTCAAAAAGAAGAAATGGTCTGCTCAAGAAAGCCTATGAACTATCTGTTCTATGTGATGCTGAAGTTGCCCTCATAATTTTCTCTAGCAGAGGGAAACTCTATGAATTTGGAAGTGTTGGCACTACCAAGACTATTGAGAGATACCAACGCTGCTCTTTCAATCCTCAACAAGATGATCGCCAAATCGATTGCGAAACACAGAGTTGGTTCCAAGAAGTGTCTAAGCTGAAAGCAAAATATGAGTCTCTTCAAAGGACTCAGAGGCAGTTGCTTGGAGAAGATCTTGGACCTTTGAACATAAAGGAGTTGCAGAATCTTGAGAAACAGCTTGAAGGTGCTTTAGCACAAGCTAGACAAAGAAAGACACAAATTATGATTGAACAAATGGAAGAGCTTCGCAAAAGGGAACGCCATCTAGGAGACATGAACAAGCAACTAAGACTCAAGCTTGAAGGAGAAGGGTTTAATCTCAAAGCTATGGAAAGCTTGTGGAGTTCAAACTCAGTTGCTGGAAGTAGCAACTTTACCTTTCAGCAACCTCAAACCAACCCTATGTCTATGACTATGGATATCCAAGCAGAACCTTTTTTGCAAATAGGATATCAACAATATGTTCAAGCTGAAGCATCCAATGTTTCCAAGAACATGGCTTGTGAGACTAACTTCATGCAGGGATTTTTCCTTTGA 750 0.3987 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGTTKTIERYQRCSFNPQQDDRQIDCETQSWFQEVSKLKAKYESLQRTQRQLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRKRERHLGDMNKQLRLKLEGEGFNLKAMESLWSSNSVAGSSNFTFQQPQTNPMSMTMDIQAEPFLQIGYQQYVQAEASNVSKNMACETNFMQGFFL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00695 249 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g00695 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa4g00695 249 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Vifa4g00695 249 Coils Coil 121 144 - -
Vifa4g00695 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa4g00695 249 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Vifa4g00695 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa4g00695 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa4g00695 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa4g00695 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa4g00695 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa4g00695 249 Coils Coil 94 114 - -
Vifa4g00695 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 194 - -
Vifa4g00695 249 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g00695 249 FunFam MADS-box transcription factor 1 13 84 - -
Vifa4g00695 249 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00695 Vifa-Chr4 201816222 201819175 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00695 1 249 MADS-box Gene Family AT2G45650 65.882 3.20e-110 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa4g00695 K-box 9.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00695 K09264 - gmx:100820061 414.846