Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00693 ATGGTGAGAGGGAAGACAGAAATGAAGCGTATAGAGAACGCAACAAGTAGACAAGTAAGATTTTCAAAGAGAAGAAATGGTTTGATGAAGAAAGCTTTTGAGTTATCAATTTTGTGTGATGTTGAAGTTGCTCTTATTGTTTTCTCACCAAGAGGGAGAATATATGAATTTGCAAGTTCAAGCATTTTAGAAACAATTGAACGATACCGCAGTCATACCAGGATTAACAATGCTCCAACAACAATTGAATCACTTGAAAATACTCAGCGTTTGAAGGAAGAAGCAGAAAACATGACGAAAAAGATTGATCTTCTCGAGACTTCAAAACGAAAATTCTTCGGAGATGGTTTAGGGAGTTGTTCAATTGATGAACTACAAAGGATAGAGCAGCAGTTGGAGAGGAGTATAACCAAAATTCGAGTTAAAAAGACTGAGGTTTTCGGAGAACAAATTGAACTGCTAAAAGAAAAGGAAAAAACCCTAGTTGATGAAAATACTAGGCTCTCTGAGAAGTATGATAGTTATTCATCACAGCAAGCAAAAATGGATGAGAGTGAAAATGTAGTTGAAGTTGAAGCTTATGCAGATCAAAGTAGTCCAATTTCATATGTGGAGACTGAGTTGTTCATTGGTCTTCCAGAAACAAGAACAAGGCGAATCTCTCCAAAGTTGAGGACTAATTAA 684 0.3626 MVRGKTEMKRIENATSRQVRFSKRRNGLMKKAFELSILCDVEVALIVFSPRGRIYEFASSSILETIERYRSHTRINNAPTTIESLENTQRLKEEAENMTKKIDLLETSKRKFFGDGLGSCSIDELQRIEQQLERSITKIRVKKTEVFGEQIELLKEKEKTLVDENTRLSEKYDSYSSQQAKMDESENVVEVEAYADQSSPISYVETELFIGLPETRTRRISPKLRTN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00693 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Vifa4g00693 227 Coils Coil 122 145 - -
Vifa4g00693 227 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Vifa4g00693 227 Coils Coil 88 108 - -
Vifa4g00693 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa4g00693 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa4g00693 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa4g00693 227 Gene3D - 14 111 IPR036879 GO:0003677|GO:0046983
Vifa4g00693 227 Coils Coil 151 171 - -
Vifa4g00693 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa4g00693 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa4g00693 227 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g00693 227 FunFam Agamous-like MADS-box protein AGL13 13 78 - -
Vifa4g00693 227 SUPERFAMILY SRF-like 3 88 IPR036879 GO:0003677|GO:0046983
Vifa4g00693 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa4g00693 227 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00693 Vifa-Chr4 200800105 200818289 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00693 1 159 MADS-box Gene Family AT2G45660 66.460 3.21e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa4g00693 K-box 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00693 - - psat:127075834 375.941