Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00692 ATGATCCGAGTGAGATTCATACCATTGATGGGAGATTTTGGATTTGGCCTGAAGGGAACTCACTCAACCCTTTATTCCTATCTCTTCTCTCCTTCATTTTCTCAATATTTGGTGCATATCTGTTCCCTATTGAAGTTGCTTTTCTTGCTGCAAATTAAGATGGTGAGAGGGAAGACAGAGATGAAGCGTATAGAGAACGCAACAAGTAGACAAGTAACATTTTCAAAGAGAAGAAATGGTTTGATGAAGAAAGCTTTTGAGTTATCAATTTTGTGTGATGCTCAAGTTGCTCTTATTGTTTTCTCACCAAGAGGGAGACTATATGAATTCGCAAGTTCAAGCATTCTAGAAACAATTGAAAGATACCGCAGTCATACAAGGATTCATAATAATACAACAACATCTGAACCTGCTGAAAATATTCAGCATTTGAAGGAAGACGCAGAAAACATGATGAGAGAGATTGATCTTCTTGAGACTTCAAAACGAAAATTCTTAGGAGAATGTTTAGCGACTAGTTCCATTGATGAACTACAAAGGATAGAGCAACAGATGGAGAAGAGTATAACCAAAATTCGAGAAAAAAAGGCCGAGGTTTTCAGAGATCAAATTGAACTGTTAAAAGAAAAGGAAAAAACCCTAGTTGCTGAAAATATCAGGCTCTCTAAGAAGTATGATAGTTATTCATCACAGCATGCAAAAAAGGATGATAGAGAAAATATAGACAAGGTTGAAGGTAATGCAGATCAAAGTAGTGCAAATTCAGATGTGGAGACTGAATTATTCATTGGTCTTCCAGAAACAAGAACAAGGTGCATTTCTCCAAAGTTGAGGACTAATTAA 843 0.363 MIRVRFIPLMGDFGFGLKGTHSTLYSYLFSPSFSQYLVHICSLLKLLFLLQIKMVRGKTEMKRIENATSRQVTFSKRRNGLMKKAFELSILCDAQVALIVFSPRGRLYEFASSSILETIERYRSHTRIHNNTTTSEPAENIQHLKEDAENMMREIDLLETSKRKFLGECLATSSIDELQRIEQQMEKSITKIREKKAEVFRDQIELLKEKEKTLVAENIRLSKKYDSYSSQHAKKDDRENIDKVEGNADQSSANSDVETELFIGLPETRTRCISPKLRTN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00692 280 CDD MADS_MEF2_like 56 126 IPR033896 GO:0000977|GO:0045944
Vifa4g00692 280 Coils Coil 141 161 - -
Vifa4g00692 280 SMART madsneu2 54 113 IPR002100 GO:0003677|GO:0046983
Vifa4g00692 280 Coils Coil 175 198 - -
Vifa4g00692 280 ProSiteProfiles MADS-box domain profile. 54 114 IPR002100 GO:0003677|GO:0046983
Vifa4g00692 280 MobiDBLite consensus disorder prediction 226 255 - -
Vifa4g00692 280 FunFam MADS-box transcription factor 1 66 137 - -
Vifa4g00692 280 PANTHER SERUM RESPONSE FACTOR HOMOLOG 56 226 - -
Vifa4g00692 280 ProSiteProfiles K-box domain profile. 141 231 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g00692 280 MobiDBLite consensus disorder prediction 227 245 - -
Vifa4g00692 280 Pfam K-box region 140 225 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g00692 280 Gene3D - 67 147 IPR036879 GO:0003677|GO:0046983
Vifa4g00692 280 PRINTS MADS domain signature 76 91 IPR002100 GO:0003677|GO:0046983
Vifa4g00692 280 PRINTS MADS domain signature 91 112 IPR002100 GO:0003677|GO:0046983
Vifa4g00692 280 PRINTS MADS domain signature 56 76 IPR002100 GO:0003677|GO:0046983
Vifa4g00692 280 ProSitePatterns MADS-box domain signature. 56 110 IPR002100 GO:0003677|GO:0046983
Vifa4g00692 280 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 63 110 IPR002100 GO:0003677|GO:0046983
Vifa4g00692 280 SUPERFAMILY SRF-like 56 139 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00692 Vifa-Chr4 199817624 199848537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00692 54 212 MADS-box Gene Family AT2G45660 64.596 1.04e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa4g00692 K-box 9.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00692 - - psat:127075834 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00692 4 199817624 199848537 Vifa4g00692 4 199817624 199848537 ECH
Vifa4g00687 4 198310335 198313586 Vifa4g00692 4 199817624 199848537 ECH