Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00690 ATGGTGAGAGGAAAGACAGAAATGAAGCGTATAGAGAACGCAACAAGTAGACAAGTAACATTTTCAAAGAGAAGAAATGGTTTGATGAAGAAAGCTTTTGAGTTATCAGTTTTGTGTGATGCTGAAATTGCTCTTATTGTTTTCTCACCAAGAGGAAGACTTTATGAATTTGCAAGTTCAAGCATTCTAGAAACAATTGACCGATACCGCAGTCATAGCCGAAACAATACTCCAACAACATCTGATTCTGTTGAAAATACTCAGCATTTGAAGGAAGAAGCAGAAAACATGATGAAAAAGATTGATCTTCTCGAGACTTCAAAACGGAAACTCTTAGGAGAAGATTTAGGGACTTGTTCCATTAATGAACTACAAAAAATAGAGCAACAGTTGGAGAAGAGTATAACCAAAATTCGCGCAAAAAAGACTCAAGTCTACATGGAACAAATAGATCAGCTAAAAGAAAAGGAAAAAGCCCTAGTTGCTGAAAATGCAATGCTCTCGGAGAAGTTTTATGAATCTTTCAATCAAAGTAGTCCAAGTTCAGATGTTGAAACTGAATTATTCATTGGACTTCCAGAAACAAGAACAAGGAGGATTTCTCCAATGTTGAGGACCAATTAA 624 0.359 MVRGKTEMKRIENATSRQVTFSKRRNGLMKKAFELSVLCDAEIALIVFSPRGRLYEFASSSILETIDRYRSHSRNNTPTTSDSVENTQHLKEEAENMMKKIDLLETSKRKLLGEDLGTCSINELQKIEQQLEKSITKIRAKKTQVYMEQIDQLKEKEKALVAENAMLSEKFYESFNQSSPSSDVETELFIGLPETRTRRISPMLRTN 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00690 207 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g00690 207 FunFam MADS-box transcription factor 1 13 84 - -
Vifa4g00690 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa4g00690 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa4g00690 207 Coils Coil 121 144 - -
Vifa4g00690 207 Gene3D - 14 110 IPR036879 GO:0003677|GO:0046983
Vifa4g00690 207 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Vifa4g00690 207 Coils Coil 87 114 - -
Vifa4g00690 207 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Vifa4g00690 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa4g00690 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa4g00690 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa4g00690 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa4g00690 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa4g00690 207 Coils Coil 150 170 - -
Vifa4g00690 207 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g00690 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00690 Vifa-Chr4 199285948 199290701 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00690 1 158 MADS-box Gene Family AT2G45660 73.418 5.88e-82 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa4g00690 K-box 2.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00690 - - psat:127075834 310.842