Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00689 ATGACTCGTTGGATATTTTATTACGTGGAAGGATTATGTTTAAGTGAAAATTTTATTCTCTATGTATATATTAAACTAAATAACGGCAATGACGTTTTAGAAACAATTGAACGATACCGCAGTCATACCAGGATTAATAATACTCCAACAACATCTGAATCTTCTGAATATACTCAGCATTTGAAGGAAGAAGCAGAAAACATGATGAAAAAGATTGATCTTCTCGAGACTTCAAAACGTAAACTCTTAGGAGAAGGTATAGGGACTTGTTCCATTGAAGAACTACAAAAGATAGAGCAACAGTTAGAGAATAGTATAACCAAAATTCGAGCAAAAAAGATTCAGGTTTTCAGGGAGCAAATTGATCAGCTTAAAGAAAAGGAAAAAACCCTAATTGCTGAAAATGTCATGCTTTCTGAGAAGTATGATAGTTATTCATCACAGCAGGCAAAAAAAGATGACAGAGAAAATATAGCTGATGTTGAAGCTTATGCAGATCAAAGTAGTCCAAGTTCAGATGTTGAAACTGAATTATTCATTGGTCTTCCAGAAACAAGAACAAGGAGGATTTCTCCAATGTTGAGGATTAATTAG 594 0.335 MTRWIFYYVEGLCLSENFILYVYIKLNNGNDVLETIERYRSHTRINNTPTTSESSEYTQHLKEEAENMMKKIDLLETSKRKLLGEGIGTCSIEELQKIEQQLENSITKIRAKKIQVFREQIDQLKEKEKTLIAENVMLSEKYDSYSSQQAKKDDRENIADVEAYADQSSPSSDVETELFIGLPETRTRRISPMLRIN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00689 197 Pfam K-box region 55 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g00689 197 Coils Coil 58 85 - -
Vifa4g00689 197 ProSiteProfiles K-box domain profile. 58 148 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g00689 197 MobiDBLite consensus disorder prediction 146 161 - -
Vifa4g00689 197 Coils Coil 92 141 - -
Vifa4g00689 197 MobiDBLite consensus disorder prediction 143 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00689 Vifa-Chr4 198647920 198649328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00689 30 129 MADS-box Gene Family AT2G45660 63.725 2.34e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00689 - - psat:127075834 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00689 4 198647920 198649328 Vifa4g00689 4 198647920 198649328 ECH
Vifa5g01418 5 421883154 421886052 Vifa4g00689 4 198647920 198649328 PCT