Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00688 ATGACTCGTTGGATATTTTATTACGTGGAAGGATTATGTTTAAGTGGTATTAGTGGAGCAGAGTTCGTTTTAGAAACAATTGAACGATACCGCAGTCATACCAGGATTAATAATACTCCAACAACATCTGAATCTTCTGAATATACTCAGCATTTGAAGGAAGAAGCAGAAAACATGATGAAAAAGATTGATCTTCTCGAGACTTCAAAACGTAAACTCTTAGGAGAAGGTATAGGGACTTGTTCCATTGAAGAACTACAAAAGATAGAGCAACAGTTAGAGAATAGTATAACCAAAATTCGAGCAAAAAAGATTCAGGTTTTCAGGGAGCAAATTGATCAGCTTAAAGAAAAGGAAAAAACCCTAATTGCTGAAAATGTCATGCTTTCTGAGAAGTATGATAGTTATTCATCACAGCAGGCAAAAAAAGATGACAGAGAAAATATAGCTGATGTTGAAGCTTATGCAGATCAAAGTAGTCCAAGTTCAGATGTTGAAACTGAATTATTCATTGGTCTTCCAGAAACAAGAACAAGGAGGATTTCTCCAATGTTGAGGATTAATTAG 567 0.3492 MTRWIFYYVEGLCLSGISGAEFVLETIERYRSHTRINNTPTTSESSEYTQHLKEEAENMMKKIDLLETSKRKLLGEGIGTCSIEELQKIEQQLENSITKIRAKKIQVFREQIDQLKEKEKTLIAENVMLSEKYDSYSSQQAKKDDRENIADVEAYADQSSPSSDVETELFIGLPETRTRRISPMLRIN 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00688 188 Coils Coil 49 76 - -
Vifa4g00688 188 MobiDBLite consensus disorder prediction 134 167 - -
Vifa4g00688 188 MobiDBLite consensus disorder prediction 137 152 - -
Vifa4g00688 188 Coils Coil 83 132 - -
Vifa4g00688 188 ProSiteProfiles K-box domain profile. 49 139 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g00688 188 Pfam K-box region 46 133 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00688 Vifa-Chr4 198647920 198649328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00688 25 120 MADS-box Gene Family AT2G45660 66.327 2.38e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00688 - - psat:127075834 263.077