Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00687 ATGGTGAGAGGGAAGACGCAGATGAAGCGTATAGAGAATGCAACAAGTAGACAAGTAACATTTTCAAAGAGAAGAAATGGTTTGATGAAGAAAGCTTTTGAGTTATCAGTTTTGTGTGATGCTCAAGTTGCTCTTATTGTTTTCTCACCAAGTGGAAGACTTTATGAGTTTGCAAGCTCAAGCATTTTAGAAACAATTGATCGATACCGCAGTCATAGCCAGGTTAATAATACTCCAACAACATCTGAATCTGCTGAAAATACTCAGCATTTGAAGGAAGAAGCAGAAAACATGATGAAAAAGATTGATCTTCTCGAGACTTCAAAACGGAAACTCTTAGGAGAAGATTTAGGGACTTGTTCCATTAATGAACTACAAAAAATAGAGCAACAGTTGGAGAAGAGTATAACCAAAATTCGAGCAAAAAAGGCTCTGGTCTTCAGGGAACAAATTCACCAGCTAAAAGAAAAGGAAAATGCCCTAGTTGCTGAAAATGTCAGGCTGTCTGAGATGTATGATAGTTATTCATCACAGCATGCAAAAAAGGATGATAGAGAAAATATAGGTGAAGGTGAAGGTAATGCAGATCAGAGTAGTCCAAATTCAGATGTGGAGACTGAATTATTCATTGGTCTTCCAGAAACAAGAACAAGGCGTATTAATTTAGAACGGAGACGAATCTAA 684 0.3713 MVRGKTQMKRIENATSRQVTFSKRRNGLMKKAFELSVLCDAQVALIVFSPSGRLYEFASSSILETIDRYRSHSQVNNTPTTSESAENTQHLKEEAENMMKKIDLLETSKRKLLGEDLGTCSINELQKIEQQLEKSITKIRAKKALVFREQIHQLKEKENALVAENVRLSEMYDSYSSQHAKKDDRENIGEGEGNADQSSPNSDVETELFIGLPETRTRRINLERRRI 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00687 227 Coils Coil 122 145 - -
Vifa4g00687 227 Coils Coil 88 115 - -
Vifa4g00687 227 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Vifa4g00687 227 MobiDBLite consensus disorder prediction 176 191 - -
Vifa4g00687 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa4g00687 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa4g00687 227 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g00687 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
Vifa4g00687 227 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g00687 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa4g00687 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa4g00687 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa4g00687 227 MobiDBLite consensus disorder prediction 174 207 - -
Vifa4g00687 227 SUPERFAMILY SRF-like 3 86 IPR036879 GO:0003677|GO:0046983
Vifa4g00687 227 FunFam MADS-box transcription factor 1 13 85 - -
Vifa4g00687 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa4g00687 227 Gene3D - 14 106 IPR036879 GO:0003677|GO:0046983
Vifa4g00687 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00687 Vifa-Chr4 198310335 198313586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00687 1 157 MADS-box Gene Family AT2G45660 73.248 2.34e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa4g00687 K-box 3.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00687 - - psat:127075834 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00687 4 198310335 198313586 Vifa4g00687 4 198310335 198313586 ECH
Vifa4g00687 4 198310335 198313586 Vifa4g00692 4 199817624 199848537 ECH