Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa4g00683 | ATGGATAATCATGGGCATCCACCTCCATATGGATATCCAAACCCATATGCATACCCTCCTCCATATCCCAATCCATATCCATATCCATATTCATCATATCCACCTCAATCTCATGATCCGGCTGATCCACGTCCACCTCCACCACCACCACCACATGCAACCACTCCTTATTCACCATATCCACAAAACTCTTCGTACCCCTTCAACTACAACTACTCCTATCCACCACCTCCTCCATCAAACCCTTCAGAGTATCCTCCTCCTCAACAATCTCATGCTTATCCTTATCCTTACCCTTACCCTTACTCTTCATACCCTTATCCCTATCCTTACCAAGCCCTTCCAATCAAAGATGATCCAAAACCAGACTCTCCTCATACTTCTCCTTACCCTACTTTGAGTGATCTTATGAACAATACTCAGATATCTGATAACAGACCAAATACACCTCCTTTATTGGCACATTCCAATTCTGTTTCTACTGAAGAGAGGCAAGAAGATTTTTGTGGTCATTCTAGTCATCATTCCTTTTCAGGTTTTGAGAATTCTTACTATGATATGGGGGGTTCACCCAAACTTTCAGCTGCTTCGTCTGATGACTCTCTGTATAACCAGAGTTTGCAGATTGTTCCGGTTCAGAGTAAAGGCTCTCTGAAGTTTTTGCTTTTGCATGGTAATTTAGATATATGTATTCATGGAGCTAAGAATCTTCCTAATATGGATATGTTTCATAAGACTTTAGATGATATGTTTGGCAAATTTCCTGGTAATGTGGGGAATAAGATCGAGGGAACAATGAGTAGGAAGATTACTAGTGATCCTTATGTTTCGATTTCTTTGTTAAATGCTGTAGTTGGTAGAACTTTTGTGATTAGCAATAGTGAAAATCCTGTTTGGGAGCAACACTTTTATGTTCCTGTTGCACATAATGCTGCTGAAGTGCATTTTGTTGTTAAGGATAGTGATGTGGTTGGTTCACAACTTATTGGTGTTGTTGCGATTCCGGTGGAGCAGATATATACGGGTGAAAAGATACATGGGACTTACCCTATCCTTAATAACAGCGGGAAGCCTTGTAAGCAAGGTGCTGTGTTGACTGTTTCCATTCAATTCATTCCAATGGAGAAGCTGTCCATTTATCATCAAGGAGTTGGAGCGGGGCCTGATTATATTGGTGTGCCGGGAACATATTTTCCGTTGAGGAAAGGCGGAACTGTTACTCTATATCAAGACGCTCATGTTCCGGATGGATGCCTCCCTAATGTCATGCTTGATAATGGAACGCATTATGCTAATGGAAAGTGTTGGGCTGACGTCTTTGATGCGATACAGCAAGCAAAGCGTTTGGTTTACATTACAGGGTGGTCGGTGTGGCACAAAGTTAGGTTGCTAAGGGATGCCGGTCATTCTCATGAAACGGATTTCACCCTTGGTGATCTTTTGAGGTCCAAGTCTTCAGAAGGAGTAAGAGTGCTTCTCCTTGTTTGGGATGACCCCACCTCAAGAAGCATTCTTGGTTATAAGACAGACGGTGTCATGGCAACTCATGATGAGGAAACTCGACGATTTTTCAAACACTCTTCTGTGCAAGTGCTACTTTGTCCTCGCATTGCTGGAAAAAGACACAGTTGGGCCAAGCAAAAGGAAGTTGAAACAATATATACACATCATCAGAAGACTATAATTGTGGACGCTGATGCTGGAAATCACAGAAGAAAAATTGTAGCATTTATTGGTGGACTTGATTTGTGTGACGGCCGATTTGATACTCCTCATCATCCCCTCTTTAGGTCGCTGCAGACACTGCACAAGGATGATTATCACAACCCTACTTTCACGGGTAGTACTGGTGGCTGTCCGCGGGAACCATGGCACGACTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATATTCTGACCAATTTTGAGGAGCGCTGGTTAAGAGCTGCAAAACCTACAGGGATAAAAAAGTTTAGGAGTTCGTATGACGATGCGTTGCTCAAGATAGAAAGAATTTCAGATATTATCCCTATGTCTGGCGCTCCTAGTGATGGTGATGATAATCCTGAAGCTTGGCATGCTCAGATATTTCGTTCAATTGATTCAAGCTCTGTCAAGGGATTTCCCAAGGAGCCAAAAGATGCATCAGAAAAGAATCTAGTATGCGGGAAGAATGTGCTGATAGACATGAGTATACATACAGCATATGTGAAGGCCATTCGCGCCGCGCAGCATTACATTTACATAGAGAATCAATATTTCATTGGTTCTTCATACAATTGGAGCCAAAATAAAGACATTGGTGCTAATAATTTAATTCCAATGGAGATTGCTCTGAAGATTGCTGAAAAAATAAAGGCAAATGAGAGGTTTGCAGTATACATAGTTATTCCAATGTGGCCAGAGGGTAATCCAACAGGTGCTGCCACTCAAAGGATTCTATTTTGGCAGCATAAAACAATGCAAATGATGTACGAGACAGTTTACAAGGCTTTGGCTGAAGTTGGGCTTGAAGCAGCGTTCTCTCCACAAGACTATTTGAACTTTTTCTGTCTTGGAAACCGAGAAGCCATAGATATGCATGAGAATATCGTTGTGTCTGGAATTCCTCCCCCACCAAATACTCCACAAGTAAATAGTCGAAATAACCGACGGTTCATGATTTATGTTCATTCAAAAGGCATGATTGTTGATGATGAATATGTGATATTGGGGTCAGCAAACATTAATCAGCGCTCTATGGAAGGAACAAGGGACACTGAGATTGCAATCGGAGCTTATCAACCTCAATATACATGGGCGAAAAAGCAGTCTTATCCACGTGGACAGGTTCATGGATACAGAATGTCACTTTGGGCAGAACATACGGGCACCGTCGAAGACTGTTTCTTACAACCAGAGAGCCTGGACTGTGTGAGAAGGGTTAGAACGATGTCTGAAATGAACTGGAATCAATTTGCATCAAATGATTTGACAGAGATGCGAGGACATCTAATAAAGTACCCTGTAGAAGTTGATAGAAAGGGTAAGGTTAGATCTCTTCCTGGTCATGAAGAGTTCCCTGATGTTGGAGGAAAGATAATAGGATCATTCATTGCCATTCAAGAGAATCTAACCATTTGA | 3126 | 0.4187 | MDNHGHPPPYGYPNPYAYPPPYPNPYPYPYSSYPPQSHDPADPRPPPPPPPHATTPYSPYPQNSSYPFNYNYSYPPPPPSNPSEYPPPQQSHAYPYPYPYPYSSYPYPYPYQALPIKDDPKPDSPHTSPYPTLSDLMNNTQISDNRPNTPPLLAHSNSVSTEERQEDFCGHSSHHSFSGFENSYYDMGGSPKLSAASSDDSLYNQSLQIVPVQSKGSLKFLLLHGNLDICIHGAKNLPNMDMFHKTLDDMFGKFPGNVGNKIEGTMSRKITSDPYVSISLLNAVVGRTFVISNSENPVWEQHFYVPVAHNAAEVHFVVKDSDVVGSQLIGVVAIPVEQIYTGEKIHGTYPILNNSGKPCKQGAVLTVSIQFIPMEKLSIYHQGVGAGPDYIGVPGTYFPLRKGGTVTLYQDAHVPDGCLPNVMLDNGTHYANGKCWADVFDAIQQAKRLVYITGWSVWHKVRLLRDAGHSHETDFTLGDLLRSKSSEGVRVLLLVWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRIAGKRHSWAKQKEVETIYTHHQKTIIVDADAGNHRRKIVAFIGGLDLCDGRFDTPHHPLFRSLQTLHKDDYHNPTFTGSTGGCPREPWHDLHSKIDGPAAYDILTNFEERWLRAAKPTGIKKFRSSYDDALLKIERISDIIPMSGAPSDGDDNPEAWHAQIFRSIDSSSVKGFPKEPKDASEKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWSQNKDIGANNLIPMEIALKIAEKIKANERFAVYIVIPMWPEGNPTGAATQRILFWQHKTMQMMYETVYKALAEVGLEAAFSPQDYLNFFCLGNREAIDMHENIVVSGIPPPPNTPQVNSRNNRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAIGAYQPQYTWAKKQSYPRGQVHGYRMSLWAEHTGTVEDCFLQPESLDCVRRVRTMSEMNWNQFASNDLTEMRGHLIKYPVEVDRKGKVRSLPGHEEFPDVGGKIIGSFIAIQENLTI | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa4g00683 | 1041 | MobiDBLite | consensus disorder prediction | 29 | 92 | - | - | |
| Vifa4g00683 | 1041 | Pfam | C2 domain | 225 | 351 | IPR000008 | - | |
| Vifa4g00683 | 1041 | SUPERFAMILY | Phospholipase D/nuclease | 399 | 651 | - | - | |
| Vifa4g00683 | 1041 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 218 | 374 | IPR035892 | - | |
| Vifa4g00683 | 1041 | SMART | pld_4 | 552 | 587 | IPR001736 | GO:0003824 | |
| Vifa4g00683 | 1041 | SMART | pld_4 | 887 | 914 | IPR001736 | GO:0003824 | |
| Vifa4g00683 | 1041 | Gene3D | C2 domain | 221 | 367 | IPR035892 | - | |
| Vifa4g00683 | 1041 | Gene3D | Endonuclease Chain A | 699 | 944 | - | - | |
| Vifa4g00683 | 1041 | ProSiteProfiles | C2 domain profile. | 214 | 349 | IPR000008 | - | |
| Vifa4g00683 | 1041 | Gene3D | Endonuclease Chain A | 423 | 669 | - | - | |
| Vifa4g00683 | 1041 | SUPERFAMILY | Phospholipase D/nuclease | 710 | 973 | - | - | |
| Vifa4g00683 | 1041 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 552 | 587 | IPR001736 | GO:0003824 | |
| Vifa4g00683 | 1041 | MobiDBLite | consensus disorder prediction | 29 | 57 | - | - | |
| Vifa4g00683 | 1041 | MobiDBLite | consensus disorder prediction | 71 | 92 | - | - | |
| Vifa4g00683 | 1041 | PANTHER | PHOSPHOLIPASE D | 217 | 1031 | IPR015679 | - | |
| Vifa4g00683 | 1041 | SMART | C2_3c | 226 | 348 | IPR000008 | - | |
| Vifa4g00683 | 1041 | FunFam | Phospholipase D delta | 426 | 666 | - | - | |
| Vifa4g00683 | 1041 | Pfam | Phospholipase D Active site motif | 888 | 914 | IPR001736 | GO:0003824 | |
| Vifa4g00683 | 1041 | Pfam | Phospholipase D Active site motif | 553 | 587 | IPR001736 | GO:0003824 | |
| Vifa4g00683 | 1041 | MobiDBLite | consensus disorder prediction | 128 | 150 | - | - | |
| Vifa4g00683 | 1041 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 887 | 914 | IPR001736 | GO:0003824 | |
| Vifa4g00683 | 1041 | MobiDBLite | consensus disorder prediction | 113 | 150 | - | - | |
| Vifa4g00683 | 1041 | Pfam | Phospholipase D C terminal | 961 | 1031 | IPR024632 | - | |
| Vifa4g00683 | 1041 | CDD | C2_plant_PLD | 221 | 372 | - | - | |
| Vifa4g00683 | 1041 | FunFam | Phospholipase D | 700 | 933 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa4g00683 | Vifa-Chr4 | 196410328 | 196416180 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa4g00683 | 24 | 1041 | Phospholipase D Gene Family (Wang group) | AT2G42010 | 66.730 | 0.0 | 1398 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa4g00683 | K01115 | - | gmx:100805294 | 1573.91 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vifa4g00683 | 4 | 196410328 | 196416180 | Vifa4g00683 | 4 | 196410328 | 196416180 | ECH |