Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00682 ATGCCTGCCACGTGTGCCGCTCGGATCTTCCAACTCACCCGAGAACTCGGACATAAATCAGACGGCGAAACAATCCGATGGCTCCTCGAGCACGCCGAACCCGCCATCATTGCCGCCACCGGAACCGGCACCGTCCCCGCCATCGCGATGTCCGTCAACGGAACTCTCAAAATCCCAACCACTTCCCCCAACAAGAACTCCGACCAGGAACAACAACAACAGCAATCCGAAGACTCGCCTGAAAAAAAGAAACGCAAACGACCAGCGAACAGTGCTTACGTGGACATAAACGAGAGCGCCGTTTCAGTTTCAGCAGGTTTAGTAACAACCTCCAACGTAAACACAAACATGAATAACACCGCGATAATTTCGCAACAAACTGCAATTCCGTTACCGCAAAACATGGTCCCTGTGTGGGCCATACCATCAAACACCGTTGTTCCAACCGGAAACGCGTTCTTTGTGGTCCCAGCGAATCAGCCTCAGTTTTTCACATTAGCTAGACCAATCTCCGGTTTCGTTTCATCCATGATAACTCCCGTAGTTCAACTCCAACAAGCCTCCACCTTATCCATCCCATGTTCAACGTCACCGTCGTCAAAATCTCCGGCGAGAGCCACCGTCATGGCGCCGAGCACCGCCGAAACAACCACCCCGCGAACGTTGAGAGACTTTTCATTGGAGATTTATGATAGGCGAGAGCTTCAGTTATTGTCGCGATCTTCTTCCAAGCATTGA 738 0.5149 MPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPTTSPNKNSDQEQQQQQSEDSPEKKKRKRPANSAYVDINESAVSVSAGLVTTSNVNTNMNNTAIISQQTAIPLPQNMVPVWAIPSNTVVPTGNAFFVVPANQPQFFTLARPISGFVSSMITPVVQLQQASTLSIPCSTSPSSKSPARATVMAPSTAETTTPRTLRDFSLEIYDRRELQLLSRSSSKH 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00682 245 MobiDBLite consensus disorder prediction 56 74 - -
Vifa4g00682 245 MobiDBLite consensus disorder prediction 75 91 - -
Vifa4g00682 245 Pfam TCP family transcription factor 1 89 IPR017887 -
Vifa4g00682 245 ProSiteProfiles TCP domain profile. 1 39 IPR017887 -
Vifa4g00682 245 MobiDBLite consensus disorder prediction 194 218 - -
Vifa4g00682 245 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 233 IPR005333 GO:0003700
Vifa4g00682 245 MobiDBLite consensus disorder prediction 56 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00682 Vifa-Chr4 196116513 196117250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00682 1 244 TCP Transcription Factor Family AT2G45680 51.636 1.92e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa4g00682 TCP 5.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00682 - - cam:101488699 382.489