Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00681 ATGGCTGAAGAAGATTCTAGAAACATTGATCTCTCTCTCGGAGAACCCAAAGAGGAACCGGAATCTGAAGATGGCTCCGCAATAAAGGTGATACCGAAGGCTATGCCGGTGCAGACGGGTTTACCTATGTCCATGCAAGTGAACAAGACGTTATTCCAAACTCAAACTCAGGCTCAATACCAGGCCCAAGCCCAAGCCCAAGCCCAACTATCGGTTCAAAAAAGAGCATCCACTAAAGACCGTCACACAAAAGTGGAAGGTCGTGGCCGGAGGATTCGAATGCCTGCCACGTGTGCCGCTCGGATCTTCCAACTCACCCGAGAACTCGGACATAAATCAGACGGCGAAACAATCCGATGGCTCCTCGAGCACGCCGAACCCGCCATCATTGCCGCCACCGGAACCGGCACCGTCCCCGCCATCGCGATGTCCGTCAACGGAACTCTCAAAATCCCAACCACTTCCCCCAACAAGAACTCCGACCAGGAACAACAACAACAGCAATCCGAAGACTCGCCTGAAAAAAAGAAACGCAAACGACCAGCGAACAGTGCTTACGTGGACATAAACGAGAGCGCCGTTTCAGTTTCAGCAGGTTTAGTAACAACCTCCAACGTAAACACAAACATGAATAACACCGCGATAATTTCGCAACAAACTGCAATTCCGTTACCGCAAAACATGGTCCCTGTGTGGGCCATACCATCAAACACCGTTGTTCCAACCGGAAACGCGTTCTTTGTGGTCCCAGCGAATCAGCCTCAGTTTTTCACATTAGCTAGACCAATCTCCGGTTTCGTTTCATCCATGATAACTCCCGTAGTTCAACTCCAACAAGCCTCCACCTTATCCATCCCATGTTCAACGTCACCGTCGTCAAAATCTCCGGCGAGAGCCACCGTCATGGCGCCGAGCACCGCCGAAACAACCACCCCGCGAACGTTGAGAGACTTTTCATTGGAGATTTATGATAGGCGAGAGCTTCAGTTATTGTCGCGATCTTCTTCCAAGCATTGA 1017 0.5074 MAEEDSRNIDLSLGEPKEEPESEDGSAIKVIPKAMPVQTGLPMSMQVNKTLFQTQTQAQYQAQAQAQAQLSVQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPTTSPNKNSDQEQQQQQSEDSPEKKKRKRPANSAYVDINESAVSVSAGLVTTSNVNTNMNNTAIISQQTAIPLPQNMVPVWAIPSNTVVPTGNAFFVVPANQPQFFTLARPISGFVSSMITPVVQLQQASTLSIPCSTSPSSKSPARATVMAPSTAETTTPRTLRDFSLEIYDRRELQLLSRSSSKH 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00681 338 MobiDBLite consensus disorder prediction 287 311 - -
Vifa4g00681 338 MobiDBLite consensus disorder prediction 1 26 - -
Vifa4g00681 338 ProSiteProfiles TCP domain profile. 78 132 IPR017887 -
Vifa4g00681 338 MobiDBLite consensus disorder prediction 149 167 - -
Vifa4g00681 338 MobiDBLite consensus disorder prediction 168 184 - -
Vifa4g00681 338 MobiDBLite consensus disorder prediction 149 184 - -
Vifa4g00681 338 Pfam TCP family transcription factor 77 181 IPR017887 -
Vifa4g00681 338 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 59 326 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00681 Vifa-Chr4 196116234 196117250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00681 74 337 TCP Transcription Factor Family AT2G45680 54.915 3.32e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa4g00681 TCP 6.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00681 - - cam:101488699 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00681 4 196116234 196117250 Vifa4g00681 4 196116234 196117250 ECH