Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00674 ATGGAGTTTGACAAGTCCCGGTCAGTGAAACGGAGGAAGTACGATGGTCCAGCAGGCGGTGTCAAAGTGTTGGTTGTGGATGCTAACTTGGCATGCCAAGCAATTGTATCAAAAATGCTTCTTTCACTTGGATATGAAGTTGTGACTGCTGCACTAGCTTCCGACGCATTATCCATTATTTGGGATAAGAAGAATGAGATTAACCTTATGCTTGTGGAGGCTCAGCTACCAGACATGGAAATACATGAGTTCATGGAGAAAGTGAAAGAAAGTGCTAATCTTCCATGTTTCATTATGACTGCTTACGATGATGACATTCCATCCATTGCAAGAGCACTAAGTACCGGAGCTAAATTGTGTTTTAGAAAGCCGGTTCTTCTTTTTGATCTTCAGGAGCTGTGGCGGTTTGCAGTGTGGAACAGAATTGAAACAATGTTCAGTGAAGAAGAACTTAGCTTCGGGCGGCGTCAGTCAGAGATGATTACGGTTAACAAGGGTCTCGAGTCCCAATCATCCATCAATACAGAAGAGTCTCTCCAATATGCAAATGGCAAGATACACGAATCTCCTAATGAATATATGAGATTACTCCCGAAAAAGAGAAGGCGTACCTGGACTGATGACTTACATAGGAAGTTCTTGGATGCTGTTGAAACCGCAGGAATCAACGCTCGTCCGAGGGTGATATTCGAGCTTATGGATGTGGAAGGACTTACAAAAGAGAGCGTTGCAAACTATTTACAGAAATATCGTCAATCTATGAAAATACGAGCTAGTGCTATGGCGCAGCATGTGAATGGATACGTGTCTCTGACTAAGAAACGAGGAAAAGGCCCTCTATACTCTGAGAATCAAGATGCGACTAGCAATCCTTCTATTCTCAGTAATGGGACGCCTGTGCAAGCTTCTGATTCTTCTGCACCATATGCTTCCCTGGAAAGCTCAAATTATCAGGAGTCACCTTTCGATCAAAGCCAACTGTACCCGCCATTGAAACAGCAACGTGTTGAGAAACAATGGGATTTTCGAACACTGCTGGCTTTTGACATGAACGATCAATTTTACCCGGCACTTCCTATTGCTCTACTACCACCAGAAAAAGATGAAAAGATTGACGAAATTTTTTATTCAAAACAGCTGTTTACTGATGAGGATTTGAATATGTGGTTGTCAACAATTCCAGACAAGGTGGATGATGATGATAATGATGCTGCTGCTTTTGCTTGA 1227 0.4254 MEFDKSRSVKRRKYDGPAGGVKVLVVDANLACQAIVSKMLLSLGYEVVTAALASDALSIIWDKKNEINLMLVEAQLPDMEIHEFMEKVKESANLPCFIMTAYDDDIPSIARALSTGAKLCFRKPVLLFDLQELWRFAVWNRIETMFSEEELSFGRRQSEMITVNKGLESQSSINTEESLQYANGKIHESPNEYMRLLPKKRRRTWTDDLHRKFLDAVETAGINARPRVIFELMDVEGLTKESVANYLQKYRQSMKIRASAMAQHVNGYVSLTKKRGKGPLYSENQDATSNPSILSNGTPVQASDSSAPYASLESSNYQESPFDQSQLYPPLKQQRVEKQWDFRTLLAFDMNDQFYPALPIALLPPEKDEKIDEIFYSKQLFTDEDLNMWLSTIPDKVDDDDNDAAAFA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00674 408 ProSiteProfiles Response regulatory domain profile. 22 138 IPR001789 GO:0000160
Vifa4g00674 408 SMART REC_2 21 134 IPR001789 GO:0000160
Vifa4g00674 408 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 252 IPR006447 GO:0003677
Vifa4g00674 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 255 IPR017930 -
Vifa4g00674 408 Gene3D - 21 150 - -
Vifa4g00674 408 MobiDBLite consensus disorder prediction 282 307 - -
Vifa4g00674 408 Gene3D - 200 255 - -
Vifa4g00674 408 SUPERFAMILY CheY-like 20 138 IPR011006 -
Vifa4g00674 408 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 294 IPR045279 GO:0009736
Vifa4g00674 408 Pfam Response regulator receiver domain 23 130 IPR001789 GO:0000160
Vifa4g00674 408 SUPERFAMILY Homeodomain-like 198 255 IPR009057 -
Vifa4g00674 408 MobiDBLite consensus disorder prediction 274 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00674 Vifa-Chr4 192646665 192648674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00674 20 262 Response Regulator Gene Family AT2G25180 29.918 7.26e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa4g00674 Response_reg 4.3e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00674 - - psat:127075863 689.493