Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00672 ATGATGAGTTCAGGTGCAAATTTGGTTAGTACAATTATTGGATTTGGAATGAGTGCAACTTTCATTGTATTTGTTTGCTCAAGAATAATCTGTGGAAGATTTAGAGAAAGACGTGTGGGTTCACGTACTATATTTCAGATTGATTCGATACCAGATATTGAACAGCCAGAAATGATTGGTAATGAACCTGAGCCAGCATTTGTTTCTGCAATTCCTACATTAAATTTCACTCAAGAGGCTTTTAATACCATTCAATGTACACAGTGTGTGATCTGTTTGGGAGAGTATAAAGAAAAAGAAGTATTGCGTATAATACCTTATTGTGGACACACTTTTCATCTTTCTTGCATTGATATCTGGCTTAGGAAACAATCCACTTGTCCTGTGTGTCGTTTGACATTGCATAATGTTTGTGAAGAAAAACATGTGAGACCTGTGGGATTCACCATGAGAGAATCTCTTGATGAGTCTAATGTTTCTGAAGAGAATGAGAGAGAAGTTGAAGTTAATGTAAGAGAATAG 522 0.3582 MMSSGANLVSTIIGFGMSATFIVFVCSRIICGRFRERRVGSRTIFQIDSIPDIEQPEMIGNEPEPAFVSAIPTLNFTQEAFNTIQCTQCVICLGEYKEKEVLRIIPYCGHTFHLSCIDIWLRKQSTCPVCRLTLHNVCEEKHVRPVGFTMRESLDESNVSEENEREVEVNVRE 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00672 173 MobiDBLite consensus disorder prediction 154 173 - -
Vifa4g00672 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 137 IPR013083 -
Vifa4g00672 173 PANTHER OS11G0150450 PROTEIN 1 166 - -
Vifa4g00672 173 Pfam Ring finger domain 88 131 IPR001841 -
Vifa4g00672 173 SUPERFAMILY RING/U-box 88 137 - -
Vifa4g00672 173 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Vifa4g00672 173 SMART ring_2 89 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00672 Vifa-Chr4 191779205 191780031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00672 78 134 C3H Transcription Factor Family AT4G10160 54.386 7.70e-19 78.6