Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00664 ATGGCTGGAGCTGAAGCTACTAAATATGCTTCTGCTACAAACAACATAACAAAATCAAAGAAACCAAACATGAGAAGATTCATTGGTGTAAGACAAAGGCCATCAGGCAGATGGGTAGCTGAGATCAAAGACTCATCTCAACATGTAAGGTTATGGCTTGGAACTTATGACACACCAGAAGAGGCAGCTCGAGCTTACGACGAAGCCGCTCGAGCTTTACGTGGCGAAAATGCTCGAACCAATTTCGCGGCAGCATCAGAAACCACCACACCAGTTAATGATGATCAAGGACTATTATCATCAGCACAAACAAATGAAGGAAAAAACAACAGTTTAACTTTTGCTTCATTGAAAGCAAAGTTGAGCAAGAATCTTCAAAGTATTATGGCAAGAACTAGTGATCATCATAACAACAGCAACAAGTTTTCAAAGAGTAGAGTGAGTGATCATTTCACCTTTGCTAGCATATTCAACCGGAAGAATAATTACCACCAAATCTCTGCCGTTGATATGAAGAACATTGAAAAAGTGGTGCAGCCTAGCATTATTGTTCCCTCTATTGAATCTTCAAGTGTTTCTGATTCTAGTTCTGAGTGGTTTGGTTTTCAGAATCATGGATTAGACTCCGATGGATCCGAGAATAATAACAATAATAACAATAATAGTAATAATGTCGGCGATCAAGGTTTTTTGGATCAACTCTTGGGTTGGATTGATGATACTTCTGATATTTGTGAAGGTTCAAGTAGCAAGAGGTTTAAGGTATCTTCTTCTGTTCTAGTGCCTCCAACTTTCTCTAGCTGTCCCTATGATTGTGGTTCACCTTATAGTGGTTATGCTTCTCCTTATAATAGTTGTGGCTCTCCTTGTAATGGATATGCATCTCCTTATTATGGTAACAAGAATTAA 909 0.3872 MAGAEATKYASATNNITKSKKPNMRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAAASETTTPVNDDQGLLSSAQTNEGKNNSLTFASLKAKLSKNLQSIMARTSDHHNNSNKFSKSRVSDHFTFASIFNRKNNYHQISAVDMKNIEKVVQPSIIVPSIESSSVSDSSSEWFGFQNHGLDSDGSENNNNNNNNSNNVGDQGFLDQLLGWIDDTSDICEGSSSKRFKVSSSVLVPPTFSSCPYDCGSPYSGYASPYNSCGSPCNGYASPYYGNKN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00664 302 SUPERFAMILY DNA-binding domain 27 83 IPR016177 GO:0003677
Vifa4g00664 302 FunFam ethylene-responsive transcription factor RAP2-11 25 84 - -
Vifa4g00664 302 MobiDBLite consensus disorder prediction 204 225 - -
Vifa4g00664 302 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Vifa4g00664 302 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 185 - -
Vifa4g00664 302 CDD AP2 26 85 IPR001471 GO:0003700|GO:0006355
Vifa4g00664 302 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Vifa4g00664 302 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Vifa4g00664 302 MobiDBLite consensus disorder prediction 1 23 - -
Vifa4g00664 302 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Vifa4g00664 302 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Vifa4g00664 302 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00664 Vifa-Chr4 190222784 190223692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00664 17 83 AP2-EREBP Transcription Factor Family AT5G19790 70.588 4.92e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa4g00664 AP2 1.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00664 K09286 - mtr:25500954 427.557