Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00662 ATGGTGGAAGATGGTACAGTTGATACATGTTCAACAGAAGAATGGTTGTTGAATTCACAAGAACTTGTTCCTATTGCTGTTACTAAAGCAAAAGAGGTAAAAGGGTTTCTAGGTAGATGGAAAATGATCATTTCGAAATTGGAACAAGTTCCGTCGAAGCTATCAGATTTATCTAGCCACCCTTGTTTTTCAAAGAATGCTCTTTGCAAGGAACAATTGCAGGCTGTGTCGAAGACGTTAAGAGAAGCTATTGAATTAGCTGAGTTGTGTTTGAAGGAAAAGTATGAAGGTAAATTGAGGATGCAAAGTGATCTCGACGCGTTGATTGGAAAACTTGATTTGAATTTGAAGGATTGTAGCTTGTTGACAAAAAGTGGTGTACTTGGTGAAGCTACTTTGCAGTTCAATGTTTCTGGTATTATAGCGGAATCTGATATTGCGACACATGGAAATATAAAGGAATTACTCGCACGGCTACAAATCGGTCATTTGGAGTCGAAACACAAAGCTTTGGATAGATTACATGAGATTATGAAAGATGATGAGAAGAATGTTTTGGCTGTTTTTTGTAGGAGCAATGTTGCTGCTTTGGTTCAGTTGCTTACGGCAACATCACCGAGGATTAGGGAGAAAACGGTTAGTATTATATGCTCGGTTGTGGAATCGGGTAGTAGCTGCGAAAACTGGTTAGTTACTGAGGGTGTTTTGCCACCTCTTATAAGGCTTGTTGAATCAGGTAGTGCTGTTGGTAAAGAAAAGGCTATTGTATCTCTTCAAAGGCTATCGATTTCGGAGGAAACAGCTCGCGCGACCGTCGGACACGGAGGGGTTCGTCCGTTAATCGAGCTTTGTCAGGTAGGTGATTCTGTTACACAGGCGGCGGCAGCTTGTACTTTGAAGAATATTTCGGTTGTTCCAGAAGTGAGACAGGTTTTAGCCGAAGAAGGTGTTGTTCGGGTTATGATCAATCTCCTCAACAACGGAATGCTGTTAGGCACGAAAGAGTATGCTGCTGAGTGTTTGCAGAATCTCACTGCAAGCAATGAGAATCTGAGAAGGTCCGTTATATCAGAAAACGGCATTCGAAGCCTTTTGGCTTTTCTCGATGCTCCAGTTCCTCAAGAATCCGCTGTAGGCGCGTTGAAGAATCTCGTCGGATTGGTTTCCGAAGAAACTTTGGTTTCTCTTGGAGTTCTTTCTTGTCTGGTCCATATTTTGAAGTCAGGATCATTAGGCGCGAAACAAAACGCAGCCTCGGTTATATGCAGGATTTGCAGCTCGATCGAGATGAAGAAAATGCTAGGTGAAGTCGGTTGCATACCTCTATTGATCAACATGCTTGAGGCGAAAGCAAACACTGCTAGAGAACTTGCAGCACAAGCAATTGCGAGTTTGATGATTCTGTCACAGAATAGGCGAGAAGTTAAAAAGGATGTTAAAAGCGTGCCGAGTTTGGTACAGTTGCTTGATCCTAGTCCACAGAATACTGCAAAAAAGTATGCAGTTTGTTGTCTAGGATCACTTTCTTCATGTAAGAAGTGTAAGAAGTTGATGATTTCTTATGGAGCAATAGGGTATTTGAAGAAGCTTATTGAGATGGAGATTCCAGGAGCTAAAAAGTTGCTTGAGAGATTGGAAAGAGGGAAATTGAGAAGCTTGTTTAGCAGAAAATAA 1674 0.4164 MVEDGTVDTCSTEEWLLNSQELVPIAVTKAKEVKGFLGRWKMIISKLEQVPSKLSDLSSHPCFSKNALCKEQLQAVSKTLREAIELAELCLKEKYEGKLRMQSDLDALIGKLDLNLKDCSLLTKSGVLGEATLQFNVSGIIAESDIATHGNIKELLARLQIGHLESKHKALDRLHEIMKDDEKNVLAVFCRSNVAALVQLLTATSPRIREKTVSIICSVVESGSSCENWLVTEGVLPPLIRLVESGSAVGKEKAIVSLQRLSISEETARATVGHGGVRPLIELCQVGDSVTQAAAACTLKNISVVPEVRQVLAEEGVVRVMINLLNNGMLLGTKEYAAECLQNLTASNENLRRSVISENGIRSLLAFLDAPVPQESAVGALKNLVGLVSEETLVSLGVLSCLVHILKSGSLGAKQNAASVICRICSSIEMKKMLGEVGCIPLLINMLEAKANTARELAAQAIASLMILSQNRREVKKDVKSVPSLVQLLDPSPQNTAKKYAVCCLGSLSSCKKCKKLMISYGAIGYLKKLIEMEIPGAKKLLERLERGKLRSLFSRK 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00662 557 SUPERFAMILY ARM repeat 150 536 IPR016024 -
Vifa4g00662 557 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 316 360 IPR000225 GO:0005515
Vifa4g00662 557 Gene3D - 391 538 IPR011989 -
Vifa4g00662 557 Gene3D - 131 390 IPR011989 -
Vifa4g00662 557 SMART arm_5 180 221 IPR000225 GO:0005515
Vifa4g00662 557 SMART arm_5 264 304 IPR000225 GO:0005515
Vifa4g00662 557 SMART arm_5 469 510 IPR000225 GO:0005515
Vifa4g00662 557 SMART arm_5 305 346 IPR000225 GO:0005515
Vifa4g00662 557 SMART arm_5 427 467 IPR000225 GO:0005515
Vifa4g00662 557 SMART arm_5 347 386 IPR000225 GO:0005515
Vifa4g00662 557 SMART arm_5 389 426 IPR000225 GO:0005515
Vifa4g00662 557 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 12 555 - -
Vifa4g00662 557 Pfam Armadillo/beta-catenin-like repeat 269 303 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00662 Vifa-Chr4 189463003 189464676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00662 243 533 U-box Gene Family AT3G54790 22.526 7.62e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00662 - - gmx:100809488 865.914