Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00649 ATGGTATCATGTGTATCTTCTCCGGAAACAAGTTGGTGTCCTTCACCATTATCAGTTGAAACATCATCGATTACAAGTGATGGAAGTGAGAGTGTGTTGGACTTGAAAATGAGTTCCTTATCAAGTATTAAAGAGGAAGATCTTCATCAATCATTACCTCCTCGTGTGCTGCAGGATGGAGGAATGAATAGTGTTTATGATCATCAGCTTGAACAAGCTATGGCTGAGGCTGAGAAGGCTAGATGGGATGCATATCGAGAAACGGTTAGGCGTCGCAAAGCTGAAAAAGATCTCATTGATGCAATCCGCAAGACTAATGACACCAATATCTTGTATCAAGAAGAGATAAAACTAAGGAAAGAGTTAGAGGAAGAACTACATAAAGCAAAAGAAGAAATTCACAACATGAGAAGCCAAATAGACAAAGTCAATGAAAATCTCCAACTTGCCTTGGATCACAAGTCATTAAAAGAGAATCAAATTGGTGAAGACTCAAGAACACAATCTCTTCAACTTTTCAATGAGTTTTCTTTTTCAGAAATTGAAAAAGCGACTTGTAACTTCAATCCATCCTTAAAGATTGGTGAAGGTGGATACGGAAGCATATTTAAAGGTATCCTTCGTCACACCGAGGTGGCTATAAAAATTTTGAGTCACAACAGCACTCAAGGACCTTCCGAGTTTCAACAAGAGGTTAAAATATTGAGCAAGTTAAGGCATCCAAATCTTATAACACTTATTGGAGCAAACCAAGAATCCAAAACTCTTGTCTATGAGTATTTACCAAATGGAAGCCTTGAAGATCATCTCATCTGCATAGACAGAACCATCCCTCCATTATCATGGAAGACTAGAATCCGCATCGCGACAGAACTACGTTCAGCTCTAGTTTTCCTCCACTCCAATAAACCTCACAGCATAGTGCATGGTGACTTAAAACCTTCCAACATTCTCCTTGATGCAAACCTAGTATGCAAGCTAAGCGACTTTGGAATAAGCCGAGTACTATCGCGTCAAGACGATTCTTCAAGTAACAATACCAATAGTACACAGTTTTGGATCACTAGTTTTGCAAAGGGGACATTTGCATACATGGATCCTGAATTCTTTGCAACAGGTGAACTTACTACAAAGTCAGATGTTTATTCATTTGGAATTTTGTTGTTGATGTTGGTAACTGGGAAATCAGCATTAGGAATAAAGAATGAAGTGTTGTATGGTTTAAAGGGTGGAGAAATGAAATCAATGTTGGATCCTTTGGCTGGAGATTGGCCTATTGTGGAAGGTGAAAAGTTGGTTCATTTGGGTTTGAAATGTTGTGATATGGATAGAAAAATTAGGCCAGAGCTTTATTCTGATGTGTGGAGGGTGTTGGAATCAATGAGAGGGTTGTGTAGCAATTTATAG 1407 0.3866 MVSCVSSPETSWCPSPLSVETSSITSDGSESVLDLKMSSLSSIKEEDLHQSLPPRVLQDGGMNSVYDHQLEQAMAEAEKARWDAYRETVRRRKAEKDLIDAIRKTNDTNILYQEEIKLRKELEEELHKAKEEIHNMRSQIDKVNENLQLALDHKSLKENQIGEDSRTQSLQLFNEFSFSEIEKATCNFNPSLKIGEGGYGSIFKGILRHTEVAIKILSHNSTQGPSEFQQEVKILSKLRHPNLITLIGANQESKTLVYEYLPNGSLEDHLICIDRTIPPLSWKTRIRIATELRSALVFLHSNKPHSIVHGDLKPSNILLDANLVCKLSDFGISRVLSRQDDSSSNNTNSTQFWITSFAKGTFAYMDPEFFATGELTTKSDVYSFGILLLMLVTGKSALGIKNEVLYGLKGGEMKSMLDPLAGDWPIVEGEKLVHLGLKCCDMDRKIRPELYSDVWRVLESMRGLCSNL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00649 468 PANTHER OS02G0152300 PROTEIN 20 463 - -
Vifa4g00649 468 Gene3D Phosphorylase Kinase; domain 1 158 260 - -
Vifa4g00649 468 ProSitePatterns Protein kinases ATP-binding region signature. 194 215 IPR017441 GO:0005524
Vifa4g00649 468 ProSiteProfiles Protein kinase domain profile. 188 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00649 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
Vifa4g00649 468 Coils Coil 112 146 - -
Vifa4g00649 468 SUPERFAMILY Protein kinase-like (PK-like) 167 458 IPR011009 -
Vifa4g00649 468 FunFam receptor-like protein kinase FERONIA 151 260 - -
Vifa4g00649 468 Gene3D Transferase(Phosphotransferase) domain 1 261 464 - -
Vifa4g00649 468 Pfam Protein kinase domain 192 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00649 468 SMART serkin_6 188 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00649 468 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00649 Vifa-Chr4 185633300 185635018 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00649 61 463 U-box Gene Family AT2G45910 48.780 1.05e-138 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa4g00649 Pkinase 9.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00649 - - tpra:123883511 677.167