Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00648 ATGGTATCATGTGTATCTTCTCCGGAAACAAGTTGGTGTCCTTCACCATTATCAGTTGAAACATCATCGATTACAAGTGATGGAAGTGAGAGTGTGTTGGACTTGAAAATGAGTTCCTTATCAAGTATTAAAGAGGAAGATCTTCATCAATCATTACCTCCTCGTGTGCTGGATGGAGGAATGAATAGTGTTTATGATCATCAGCTTGAACAAGCTATGGCTGAGGCTGAGAAGGCTAGATGGGATGCATATCGAGAAACGGTTAGGCGTCGCAAAGCTGAAAAAGATCTCATTGATGCAATCCGCAAGACTAATGACACCAATATCTTGTATCAAGAAGAGATAAAACTAAGGAAAGAGTTAGAGGAAGAACTACATAAAGCAAAAGAAGAAATTCACAACATGAGAAGCCAAATAGACAAAGTCAATGAAAATCTCCAACTTGCCTTGGATCACAAGTCATTAAAAGAGAATCAAATTGGTGAAGACTCAAGAACACAATCTCTTCAACTTTTCAATGAGTTTTCTTTTTCAGAAATTGAAAAAGCGACTTGTAACTTCAATCCATCCTTAAAGATTGGTGAAGGTGGATACGGAAGCATATTTAAAGGTATCCTTCGTCACACCGAGGTGGCTATAAAAATTTTGAGTCACAACAGCACTCAAGGACCTTCCGAGTTTCAACAAGAGGTTAAAATATTGAGCAAGTTAAGGCATCCAAATCTTATAACACTTATTGGAGCAAACCAAGAATCCAAAACTCTTGTCTATGAGTATTTACCAAATGGAAGCCTTGAAGATCATCTCATCTGCATAGACAGAACCATCCCTCCATTATCATGGAAGACTAGAATCCGCATCGCGACAGAACTACGTTCAGCTCTAGTTTTCCTCCACTCCAATAAACCTCACAGCATAGTGCATGGTGACTTAAAACCTTCCAACATTCTCCTTGATGCAAACCTAGTATGCAAGCTAAGCGACTTTGGAATAAGCCGAGTACTATCGCGTCAAGACGATTCTTCAAGTAACAATACCAATAGTACACAGTTTTGGATCACTAGTTTTGCAAAGGGGACATTTGCATACATGGATCCTGAATTCTTTGCAACAGGTGAACTTACTACAAAGTCAGATGTTTATTCATTTGGAATTTTGTTGTTGATGTTGGTAACTGGGAAATCAGCATTAGGAATAAAGAATGAAGTGTTGTATGGTTTAAAGGGTGGAGAAATGAAATCAATGTTGGATCCTTTGGCTGGAGATTGGCCTATTGTGGAAGGTGAAAAGTTGGTTCATTTGGGTTTGAAATGTTGTGATATGGATAGAAAAATTAGGCCAGAGCTTTATTCTGATGTGTGGAGGGTGTTGGAATCAATGAGAGGGTTGTGTAGCAATTTATAG 1404 0.386 MVSCVSSPETSWCPSPLSVETSSITSDGSESVLDLKMSSLSSIKEEDLHQSLPPRVLDGGMNSVYDHQLEQAMAEAEKARWDAYRETVRRRKAEKDLIDAIRKTNDTNILYQEEIKLRKELEEELHKAKEEIHNMRSQIDKVNENLQLALDHKSLKENQIGEDSRTQSLQLFNEFSFSEIEKATCNFNPSLKIGEGGYGSIFKGILRHTEVAIKILSHNSTQGPSEFQQEVKILSKLRHPNLITLIGANQESKTLVYEYLPNGSLEDHLICIDRTIPPLSWKTRIRIATELRSALVFLHSNKPHSIVHGDLKPSNILLDANLVCKLSDFGISRVLSRQDDSSSNNTNSTQFWITSFAKGTFAYMDPEFFATGELTTKSDVYSFGILLLMLVTGKSALGIKNEVLYGLKGGEMKSMLDPLAGDWPIVEGEKLVHLGLKCCDMDRKIRPELYSDVWRVLESMRGLCSNL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00648 467 FunFam receptor-like protein kinase FERONIA 150 259 - -
Vifa4g00648 467 Pfam Protein kinase domain 191 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00648 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672|GO:0006468
Vifa4g00648 467 PANTHER OS02G0152300 PROTEIN 20 462 - -
Vifa4g00648 467 Gene3D Phosphorylase Kinase; domain 1 157 259 - -
Vifa4g00648 467 SUPERFAMILY Protein kinase-like (PK-like) 166 457 IPR011009 -
Vifa4g00648 467 Gene3D Transferase(Phosphotransferase) domain 1 260 463 - -
Vifa4g00648 467 SMART serkin_6 187 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00648 467 Coils Coil 111 145 - -
Vifa4g00648 467 ProSiteProfiles Protein kinase domain profile. 187 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00648 467 MobiDBLite consensus disorder prediction 1 30 - -
Vifa4g00648 467 ProSitePatterns Protein kinases ATP-binding region signature. 193 214 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00648 Vifa-Chr4 185633300 185635018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00648 60 462 U-box Gene Family AT2G45910 48.780 9.43e-139 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa4g00648 Pkinase 9.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00648 - - tpra:123883511 672.93