Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00645 ATGACAAAGAAATCGCAAAGACGAGCTGTGCGGTATGAGAAAGATAAATCAGGCTGTATGTGGGGATTTATCAGTATGTTTGATTTTCGCAATGGTCACTCTACTCGGAAGTTGATTGCAGATAAGAGGCGAAGTAGTAAGCATTCGGATGGTGTTGTTCATTCGAAGAATAAGTTCGAGGTGTTGACAGATATAGATGAAGTTTGTCAAGGAAATTTTGACAATGGAGAGAGTAAAAGACTAACAGTGAGAACTATTGTTAATAAGCCTAGTGTGAAGAAACTCATAGAAGAAGAGATGTTCACCGATCGAAATGCAGGGAAGGATATTAATAATTCTGAAAGGCGCAAAATCTTACTGAAGTTAGATTCCAAAAGAAAAAAGAAATCTGACGAGAAAAAGCGTGATATGACCGATGATTTAAATTTGGACGCAACATCGAAATCTGAAACTTCGCATCGTCAGCACTCGAGGAAGCAATCTAAAGATAGTCTTGATCTGGATACAATAATCGAAGAGTTTTGTAATCTAAAAGGTATTTGTTCGATGATGCATGGCAATGACGAAGAAGTAGAAAAGCATGCACAGCCTAACCAGAAACAGAAGCATGCTGTTTCCGAAAAATGTTCAAGAGATGCTATTCGTGAATTTGTGAACCAGATGATGTTGAATGGTAAAGATCCCGTGGAAGCTAGAAAGTTTCTTTTCTCCGATGAACTAATGGAAGCACTTCAGCTTATAAGTTCGGATAAGGAACTGTTTCTTGCATTTCTACAAAATCCAAATCCACTTGTATTGAAATGTGTTCAAGAGTTTGAGAATTCTCAACGGGCGAACGAGAATAACTCTGAACAAGATCACGGCGATAAAGAACAAACTAACGAGATTGTCAACCACAAGAAGCATAACTTTTTCAGGAAAAAGGCGAAGTCTCAATCGAAAAATTCAACAAATGAAAACGGAAATACCAACATTTCAAATAGGATTGTTATTCTAAAGCCAGGTTCCGTTGGATTGGAAAATTCCGAAACTGGAAACAACCTTGCCTCGTGTCTAGAATCTCATGATAACGCCAAGTACAACGGTCCTTCTATGAGAGGAAGTTCACATTTTTCTCTTACCGAGATAAAAAAGAAATTAAAGCAGGCTATAGGAAAGGAGAGACACGGAAAAAACTTCGGTAAAGACAATGTTGGAATGAGATCTCCTAATAAAGATCATTTCTTCATCGAAAAAATCACAAGACCTATGACTGTTGTTACTAAAGGAGACAAAACCGGTACAAATAAAGATTCAGAAGCGGTTGTAGATTGTGAAAAGGGTGTTTACTCCAAACAAGGTGTTTCGAATTTATATATCGAGGCTAAGAAACATCTTTCTGAGATGATAGGAAGTGAAGATGAGAACATGGACTTGTCAAGTAGACAGATTTCCAAAACCCTTGGAAGAATAATATCTTTTCCCGATTACAACTTTTCGCCATTTGGTAGTCCTGGAAGGAATTGGGAGGACCGTTTTGTAACTGCAAAGACAAGACTTCGTGATGAAAGCTTTAACACTAAATCACAAGAAATTAAGCCAGACTCGAATTTCTCAGACGGCCTAGTTCATGTCGATAAAGAGGAAAACTGTGCTCCTGTTAGAGACGAGATAGTTACTGAAGGTGATGTAGAATCTGCGAAAGAGATAACTATTTTAGAATCTTCCTTAGAACTAGTTGGCCTCAGTACAGAAAATGAGGATGAAAGCGATGATATCTTAGAAATTTCGGATAATACAAAATGTTCTAAATTTTTGGCGCAGGATGTAACAGAAGAAAACCAATCATCATCTCCCTCCGATTCGTCAATCACTACGAAAACTAAAGAACAAGAGATTATCTCCGATGTATCAGGACGACCAAGTCCGGTGTCTGTTCTTGATGCGCCATTCTTAGAGGATGATGCCAGCTCTGGGAACTCCAAATGTGCACCTGCTGAAGTATCGATACGTCCACTACATGTTCAATTTGAAGAACAGCATTCTTCTCTTGTGAATCAAATCAGAAGAGAAAAATATTGTATCGAAGAAAACGAATTGATATGTGATTACATCGAAGCAGTCCTGCAAGCCTCTGGGTTAACAATAGATCAATTGTTGATAAAATGCCTTTCGTCGGACAAGATGCTAGACCCTTCCTTATTTGATCAGGTAGAGTTATCGCCAAACCATCTTTGCCGTGATCCGAAACTCCTATATGACTGTATCAACGAAATTCTCATGGAGGTTTGTCGCGATTACTTTGGTGCCTCGCCTTTTGTATCATTTGTAAGTCCTATTATAAAGCCAACTCCAAATATGAAAACGGTTATTTCCATGGTCTCGGAAGGAGTGTGTTGGTATTTACTTTCCGTTCCCCCGCCACACACGTTGGACAAAATTGTTAGGAAAGACATGGAAAAACGTGGATCATGGATGGATCTTCGATTTGGAGCCGAAACAGTTGGTTTTGAAATAGGCGACGCCATTCTAGCCGTCCTGATGGAAGATACAATACTTGGCTGTGTAAGCAATAACGATGCCAAGAACAGCGACAGTGTTTAA 2583 0.3895 MTKKSQRRAVRYEKDKSGCMWGFISMFDFRNGHSTRKLIADKRRSSKHSDGVVHSKNKFEVLTDIDEVCQGNFDNGESKRLTVRTIVNKPSVKKLIEEEMFTDRNAGKDINNSERRKILLKLDSKRKKKSDEKKRDMTDDLNLDATSKSETSHRQHSRKQSKDSLDLDTIIEEFCNLKGICSMMHGNDEEVEKHAQPNQKQKHAVSEKCSRDAIREFVNQMMLNGKDPVEARKFLFSDELMEALQLISSDKELFLAFLQNPNPLVLKCVQEFENSQRANENNSEQDHGDKEQTNEIVNHKKHNFFRKKAKSQSKNSTNENGNTNISNRIVILKPGSVGLENSETGNNLASCLESHDNAKYNGPSMRGSSHFSLTEIKKKLKQAIGKERHGKNFGKDNVGMRSPNKDHFFIEKITRPMTVVTKGDKTGTNKDSEAVVDCEKGVYSKQGVSNLYIEAKKHLSEMIGSEDENMDLSSRQISKTLGRIISFPDYNFSPFGSPGRNWEDRFVTAKTRLRDESFNTKSQEIKPDSNFSDGLVHVDKEENCAPVRDEIVTEGDVESAKEITILESSLELVGLSTENEDESDDILEISDNTKCSKFLAQDVTEENQSSSPSDSSITTKTKEQEIISDVSGRPSPVSVLDAPFLEDDASSGNSKCAPAEVSIRPLHVQFEEQHSSLVNQIRREKYCIEENELICDYIEAVLQASGLTIDQLLIKCLSSDKMLDPSLFDQVELSPNHLCRDPKLLYDCINEILMEVCRDYFGASPFVSFVSPIIKPTPNMKTVISMVSEGVCWYLLSVPPPHTLDKIVRKDMEKRGSWMDLRFGAETVGFEIGDAILAVLMEDTILGCVSNNDAKNSDSV 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00645 860 MobiDBLite consensus disorder prediction 602 625 - -
Vifa4g00645 860 MobiDBLite consensus disorder prediction 602 634 - -
Vifa4g00645 860 MobiDBLite consensus disorder prediction 125 164 - -
Vifa4g00645 860 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 1 848 - -
Vifa4g00645 860 Pfam Protein of unknown function (DUF3741) 219 262 IPR022212 -
Vifa4g00645 860 Pfam Domain of unknown function (DUF4378) 696 843 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00645 Vifa-Chr4 184708651 184712158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00645 1 831 TRM (TON1 Recruiting Motif) Superfamily AT4G00440 33.181 9.01e-113 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00645 - - tpra:123883590 1290.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00645 4 184708651 184712158 Vifa4g00645 4 184708651 184712158 ECH
Vifa5g01532 5 445277529 445281059 Vifa4g00645 4 184708651 184712158 PCT