Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00634 ATGGGGATTCAATGTTCGAGATTTTTTCCGTGTTGTGTGAATTCGCAAGTTAAAGCATCTGTTCTTGAAACTCCAGACGCTGAAAATGGTGATAGTGAGGTTAGTAACTGGCCTGTATTCCGCGAATTTACACTTGAGCAACTTAAGAATGCGACGTCTGGTTTTGCTGTCGAGAATATTGTATCCGAGCATGGAGAGAAGGCTCCAAATGTTGTCTATAAAGGGAAGCTGGAGAATCAAATGAGAATTGCTGTTAAACGGTTTAATAGAAGTGCTTGGCCTGATACCCGACAGTTTGTGGACGAAGCAAGAGCAGTCGGTCAGCTTCGTAACCAAAGATTGGCAAACTTGCTTGGATGTTGTTGTGAAGGAGACGATAGGTTGCTTGTTGCCGAATATATGCCAAATGAAACACTTGCAAAGCACCTTTTCCATTGGGAATCACAACCTATGAAATGGGCAATGCGACTAAGGGTTGTTCTACATCTTGCACAAGCTCTAGAGTACTGCACAAGCAAAGGACGTGCTCTCTATCACGACCTCAATGCATATAGAGTTCTCTTTGATGAGGATGGTAATCCTAGGCTCTCTACCTTTGGACTCATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACCAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACTGGGAGAGTAACACCAGAAAGCGTAATATATAGCTTTGGCACTCTTTTGCTCGACCTTCTTAGCGGAAAGCATATCCCCCCGAGTCATGCTCTTGATTTGATCCGGGACAGAAATCTTCATATGCTGACAGATTCTTGTCTGGAAGGACAATTTTCTGATAACGATGGAACTGAGCTGGTACGCTTGGCATCTCGATGTTTACAATATGAACCTAGAGAAAGGCCTAATCCAAAATCATTGGTGTCTGCTTTGGCTTCTCTTCAAAAAGAAACTGAGGTTCCTTCACATGTGTTGATGGGTATACCACATAGCACCAGTTTTGCTTCATTATCTCCACTTGGCGAGGCGTGTTCGAGAAAGGACTTGACCGCCATACACGAAGTTCTGGATCATCTTGGTTATAAAGATGATGAAGGAGTGGCAAATGAGTTATCATTCCAGATGTGGACTGATCAAATGCAGGACACATTGAATTGCAAGAAAAAGGGTGATGCCGCATTCCGACAGAAAGAATTTAGAGAAGCGATCGAGTGCTACACACAGTTCATCGATGCTGGAACAATGGTTTCTCCTACAGTCTATGCACGACGCAGTTTGTGTTATCTCATAAGCGACATGGCTCAGGAAGCGCTGACCGACGCAATGCAAGCGCAGATTATTTCACCAGTATGGCACATTGCATCCTATCTTCAATCAGTTTCCCTTGCAACAGTTGGAATGGAGAATGAAGCACAAGCAGCACTTAAAGAAGGAACAACACTTGAATCCAAGCGGAATGCAACTTTGAAACAAAAGTGA 1473 0.4352 MGIQCSRFFPCCVNSQVKASVLETPDAENGDSEVSNWPVFREFTLEQLKNATSGFAVENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNRSAWPDTRQFVDEARAVGQLRNQRLANLLGCCCEGDDRLLVAEYMPNETLAKHLFHWESQPMKWAMRLRVVLHLAQALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSTFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLHMLTDSCLEGQFSDNDGTELVRLASRCLQYEPRERPNPKSLVSALASLQKETEVPSHVLMGIPHSTSFASLSPLGEACSRKDLTAIHEVLDHLGYKDDEGVANELSFQMWTDQMQDTLNCKKKGDAAFRQKEFREAIECYTQFIDAGTMVSPTVYARRSLCYLISDMAQEALTDAMQAQIISPVWHIASYLQSVSLATVGMENEAQAALKEGTTLESKRNATLKQK 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00634 490 Gene3D Phosphorylase Kinase; domain 1 30 133 - -
Vifa4g00634 490 Pfam Protein tyrosine and serine/threonine kinase 71 309 IPR001245 GO:0004672|GO:0006468
Vifa4g00634 490 FunFam probable serine/threonine-protein kinase At4g35230 379 488 - -
Vifa4g00634 490 FunFam probable serine/threonine-protein kinase At4g35230 30 133 - -
Vifa4g00634 490 Gene3D Tetratricopeptide repeat domain 379 490 IPR011990 GO:0005515
Vifa4g00634 490 SUPERFAMILY TPR-like 380 481 IPR011990 GO:0005515
Vifa4g00634 490 Gene3D Transferase(Phosphotransferase) domain 1 135 327 - -
Vifa4g00634 490 ProSiteProfiles Protein kinase domain profile. 58 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00634 490 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 21 484 IPR045845 GO:0004672|GO:0009742
Vifa4g00634 490 FunFam probable serine/threonine-protein kinase At5g41260 135 326 - -
Vifa4g00634 490 SUPERFAMILY Protein kinase-like (PK-like) 31 319 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00634 Vifa-Chr4 181359253 181361818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00634 10 312 Glycoside Hydrolase AT3G07070 33.436 1.04e-42 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vifa4g00634 PK_Tyr_Ser-Thr 4.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00634 K14500 - gmx:100799260 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00634 4 181359253 181361818 Vifa4g00634 4 181359253 181361818 ECH