Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00622 ATGGATCGAGGTGACCAAATGGCGGGATTATCGGGTTCTGCGTCGTACTATATGCCGAGAGGATTACCTGGTTCTGGAAACCAACATGAGTTACTTAGTTCGGCGGGTATTCGTCAACTATCGAATACCAACAATTCACCCTTTCAATCGAGTATTGGTGGTGGTGGTGGAGGTACTATTGGATCTACGTTGCCGATGGATTCTTCTGGAATTTCATCCCAAAGTATCAATGTAGGCGGTCCTTCTGGGGGAGCTGCTTCAACTGGTGAGCCTGGCAAAAGGAAGCGAGGAAGACCGAGAAAATACGGGGCTGATGGAAGTGTGTCATTGGCATTGACTCCGACAACACCAGCAAGTCAGCCTGGGTCTGGATCTGGATCGCAAGGTCAGAAACGCGGTCGAGGACGCCCTCCAGGGTCAGGAAAGAAACAACAGCTGGCTTCTGTCGGAGGTTTGATCACTAGTTCAGCTGGGAACGGTTTCACTCCTCATGTCATCAACATTGCGATTGGAGAAGACATTGCGACAAAAATTCTGGCATTCTCTCAGCAGGGACCTAGAGCTATATTTGTTATGTCCGCCAATGGTGCTGTCTCTACAGTGACGCTTTGTCAGACTTCGACATCTGGGGGATCTGTCACATACGAGGGGCGTTTCGAGATACTAAGCCTGACCGGCTCCTACTTGGTTGCTGATAACAATGGCTTGCGAAACCGAACGGGTTCCTTAAGTGTTACTCTTGCAAGTCCTGATGGTCGTGTCATTGGCGGAGGCGTCGGTGGTCTGCTCATCGCCGCAAGTCCAGTTCAGGTGATAATTGGAAGCTTTATGTGGGGTGGACAAAAGGCAAAGAACAAGAAGAACGAAGATTCAGAAAATCAAGAAGTTGGCATAGAGCAAGATCATCATCATCATCATCATGGGGTTCATAATCCGGTTGCAGTGAACAGCATTTCACCGAACCAGAATCTGACTCCGAGTTCTCTGAATTCTTGGCCTGCATCGCGTCCTTTGGATATGCGTAACTCCCATATGGACATTGATTTAATGCGCGGGTGA 1059 0.4901 MDRGDQMAGLSGSASYYMPRGLPGSGNQHELLSSAGIRQLSNTNNSPFQSSIGGGGGGTIGSTLPMDSSGISSQSINVGGPSGGAASTGEPGKRKRGRPRKYGADGSVSLALTPTTPASQPGSGSGSQGQKRGRGRPPGSGKKQQLASVGGLITSSAGNGFTPHVINIAIGEDIATKILAFSQQGPRAIFVMSANGAVSTVTLCQTSTSGGSVTYEGRFEILSLTGSYLVADNNGLRNRTGSLSVTLASPDGRVIGGGVGGLLIAASPVQVIIGSFMWGGQKAKNKKNEDSENQEVGIEQDHHHHHHGVHNPVAVNSISPNQNLTPSSLNSWPASRPLDMRNSHMDIDLMRG 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00622 352 MobiDBLite consensus disorder prediction 109 130 - -
Vifa4g00622 352 MobiDBLite consensus disorder prediction 1 148 - -
Vifa4g00622 352 MobiDBLite consensus disorder prediction 314 337 - -
Vifa4g00622 352 SUPERFAMILY AF0104/ALDC/Ptd012-like 159 281 - -
Vifa4g00622 352 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 69 328 IPR039605 GO:0003680
Vifa4g00622 352 CDD DUF296 162 276 IPR005175 -
Vifa4g00622 352 FunFam AT-hook motif nuclear-localized protein 1-like 163 294 - -
Vifa4g00622 352 SMART AT_hook_2 93 105 IPR017956 GO:0003677
Vifa4g00622 352 SMART AT_hook_2 131 143 IPR017956 GO:0003677
Vifa4g00622 352 ProSiteProfiles PPC domain profile profile. 158 299 IPR005175 -
Vifa4g00622 352 MobiDBLite consensus disorder prediction 27 82 - -
Vifa4g00622 352 MobiDBLite consensus disorder prediction 300 352 - -
Vifa4g00622 352 Gene3D - 163 307 - -
Vifa4g00622 352 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 276 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00622 Vifa-Chr4 180107948 180109928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00622 1 352 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.864 9.60e-85 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00622 - - gmx:100799791 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00622 4 180107948 180109928 Vifa4g00622 4 180107948 180109928 ECH
Vifa5g01512 5 440353625 440358739 Vifa4g00622 4 180107948 180109928 PCT