Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00620 ATGACGAGTCCGTTAAGGGAAGACGAGAAACACGAGCGTGCGATTCGAGCTCTTCTTAGGCTCGAACCCAATCGAACATGCATTAACTGCAACAGTTTGATTGATATTTTACTCTGCACTGATTGCTTCCATGATGGGAAATTTGTCGCCGGTCATTCAAGTATAGATTTTATAAGGGTGGATTCAACAAGAGATTACGGTGAACTAGATGGGGAAAGTTGGACTGATCAAGAAACTTTGTTGCTGCTTGAAGCAATGGAGATTTACAATGAGAATTGGAATGAAATTGCCGAGCATGTTGGTACCAAGTCAAAAGCACAATGTATTCTTCATTTTCTTCGTATGCCCATGGAAGATGGGAAATTGGAAAATATCAATGTTCCAAGCATGTCTTTGTCATCCAGTGCGATGAATAGAGATGATAATGGAAGATCGCATCATTACTCGAATGGAGATTCTGCAGGACCTGCCCATCAAATCAGAGATTCTGACAACCGCCTGCCTTTTGCTAATTCTGGAAATCCTGTTATGGCTCTGGTTGCCTTTTTAGCCTCTGCGGTTGGACCAAGAGTAGCGGCCTCATGTGCTCATGCAGCATTATCAGTGTTGTCAGGGGATAATACTGGCTCCCAGACGGAGGCATCAAGGCATGATAATAGGACAAATCCAAAAAACATGCATTGTAGGGATGGTGGCTCTCGAGGAGAAGCTGCAATTTCAAATAATCATAATGAGGAAAAGGCAAAAGAAATTAGTTCGCGGGATCAAAATGAGGGTAGGACCACCCCACTCTCTGCTGAAAAAGTTAATGAAGCAGCTAAAGCAGGCCTCTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCCGATCACGAAGAACGAGAAATTCAGAGATTATGTGCTAATATAATTAATCATCAGTTGAACAGATTGGAATTGAAGCTGAAACAGTTTGCAGAAATCGAAACATTGTTGATGAAGGAATGCGAACAAGTGGAAAGGGCAAAACAGAGGTTTGCTGCTGAACGCACCCGTGTTATATCAGCACGTTTTGGAACTGCGGGAACTACGCCTGCAATGAATGCATCTGGTGTTGGTCCTAACAATTAA 1107 0.4273 MTSPLREDEKHERAIRALLRLEPNRTCINCNSLIDILLCTDCFHDGKFVAGHSSIDFIRVDSTRDYGELDGESWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRMPMEDGKLENINVPSMSLSSSAMNRDDNGRSHHYSNGDSAGPAHQIRDSDNRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALSVLSGDNTGSQTEASRHDNRTNPKNMHCRDGGSRGEAAISNNHNEEKAKEISSRDQNEGRTTPLSAEKVNEAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLNRLELKLKQFAEIETLLMKECEQVERAKQRFAAERTRVISARFGTAGTTPAMNASGVGPNN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00620 368 MobiDBLite consensus disorder prediction 205 268 - -
Vifa4g00620 368 FunFam SWI/SNF complex subunit SMARCC2 isoform C 70 120 - -
Vifa4g00620 368 MobiDBLite consensus disorder prediction 217 231 - -
Vifa4g00620 368 Pfam SWIRM-associated region 1 275 351 IPR032451 -
Vifa4g00620 368 Gene3D - 70 120 - -
Vifa4g00620 368 PANTHER SWI/SNF COMPLEX-RELATED 71 345 - -
Vifa4g00620 368 MobiDBLite consensus disorder prediction 240 256 - -
Vifa4g00620 368 Pfam Myb-like DNA-binding domain 73 114 IPR001005 -
Vifa4g00620 368 CDD SANT 73 115 IPR001005 -
Vifa4g00620 368 SMART sant 70 118 IPR001005 -
Vifa4g00620 368 ProSiteProfiles SANT domain profile. 69 120 IPR017884 -
Vifa4g00620 368 SUPERFAMILY Homeodomain-like 71 124 IPR009057 -
Vifa4g00620 368 ProSiteProfiles Myb-like domain profile. 73 116 IPR001005 -
Vifa4g00620 368 MobiDBLite consensus disorder prediction 132 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00620 Vifa-Chr4 178979995 178982781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00620 28 112 EF-hand Containing Proteins AT3G07740 33.333 1.02e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa4g00620 SWIRM-assoc_1 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00620 K11649 - gmx:100780440 561.607