Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00616 ATGAACAACAACAATAGAGCGAGATTTCCACCTCCCGGGATCGGTCCCGGACGCGGAGGGGCGAATCCCAACGTGAATCTGAACCAGAATCCGAACCTGAACAATCAGTTTCAGCAAAGACCACCATACCACCACCATAACCAACAACAGCACCAGCAGCAACAGCACCAGCACCAGCAGTACTATGCGCAGAGACAAATGGTGCAGCAACATCAGCCGCCACAGCAGCAGCAGCAACACCACCAGCAGCAACAACAGTGGCTGAGGAGGGCGCAGTTGGGTGGTTCGGAATCCAACGCCGCTGACGAGGTCGAGAAGACCGTGCAGTCTGAAGCCATTGACTCTAGTTCTCAAGACTGGAAGGCCGGACTAAAGATTCCACCAGCGGATACACGCTATAGGACAGAGGATGTTACAGCAACTAAAGGAAACGAATTTGAGGATTACTTTTTGAAACGGGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGACCTTCCCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACCGGCAGTGACATTCTTGCCAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTTATCTTGGTCCCAACACGTGAGTTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGAAAATCCAAGTTATGGTTACAACAGGAGGGAGGATATTGGATCTTACTAAGAAGGGTGTTTGCGTTCTTAAGCATTGCTCAATGCTGGTAATGGATGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAGCCTTCGATTCAGCAACTGATTCATTTTCTTCCAACAACCCGTCAAATCCTGATGTTTTCAGCAACATATCCTGTTACTGTGAAGGACTTCAAAGATAGGTTTCTTAACAAACCATATGTCATTAACCTTATGGATGAGCTCACTCTGAAGGGTATTACACAGTTTTATGCATTTGTGGAAGAGAGACAGAAAGTCCATTGCTTAAATACTCTCTTTTCTAAGCTACAAATAAACCAGTCAATTATCTTCTGCAACTCCGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACCGAACTGGGGTATTCATGTTTCTATATTCACGCAAAGATGCTGCAAGACCATCGTAATAGAGTATTTCATGATTTCCGTAATGGTGCATGCCGAAATCTTGTCTGTACTGACCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATTAACTTTGATTTTCCCAAGAACTCTGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGATTTGGCCACCTTGGTTTAGCGGTGAACTTGATCACTTACGAGGACCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCGCCACACATTGATCAAGCATTTTATTGCCGGTGA 1491 0.4406 MNNNNRARFPPPGIGPGRGGANPNVNLNQNPNLNNQFQQRPPYHHHNQQQHQQQQHQHQQYYAQRQMVQQHQPPQQQQQHHQQQQQWLRRAQLGGSESNAADEVEKTVQSEAIDSSSQDWKAGLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGRILDLTKKGVCVLKHCSMLVMDEADKLLSPEFQPSIQQLIHFLPTTRQILMFSATYPVTVKDFKDRFLNKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAFYCR 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00616 496 MobiDBLite consensus disorder prediction 22 93 - -
Vifa4g00616 496 Gene3D - 328 495 IPR027417 -
Vifa4g00616 496 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 323 IPR014001 -
Vifa4g00616 496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 493 IPR001650 -
Vifa4g00616 496 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 269 277 IPR000629 -
Vifa4g00616 496 Pfam DEAD/DEAH box helicase 169 311 IPR011545 GO:0003676|GO:0005524
Vifa4g00616 496 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Vifa4g00616 496 SMART ultradead3 163 337 IPR014001 -
Vifa4g00616 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 476 IPR027417 -
Vifa4g00616 496 SMART helicmild6 373 454 IPR001650 -
Vifa4g00616 496 Gene3D - 134 244 IPR027417 -
Vifa4g00616 496 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 241 495 - -
Vifa4g00616 496 Gene3D - 245 327 IPR027417 -
Vifa4g00616 496 CDD DEADc_DDX6 146 324 - -
Vifa4g00616 496 FunFam ATP-dependent RNA helicase DDX6 327 496 - -
Vifa4g00616 496 MobiDBLite consensus disorder prediction 1 124 - -
Vifa4g00616 496 MobiDBLite consensus disorder prediction 102 117 - -
Vifa4g00616 496 CDD SF2_C_DEAD 334 463 - -
Vifa4g00616 496 Pfam Helicase conserved C-terminal domain 348 454 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00616 Vifa-Chr4 176305945 176321141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00616 144 489 Eukaryotic Initiation Factors Gene Family AT3G19760 36.216 4.76e-82 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00616 K12614 - fve:101307921 794.653