Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00615 ATGGGAAGGACACCTTGTTGTGACAAGATGGGCTTGAAGAAAGGTCCTTGGACTAGTGAAGAAGATGAAGTTCTTGTCAGTTATATCAAGAAAAATGGTGGCCATGGAAGCTGGCGTTCTCTCCCTAAGTTAGCAGGCCTTCTTCGTTGTGGTAAGAGTTGCAGACTAAGATGGACGAACTACCTGAGACCCGATATTAAACGCGGTCCCTTTAAACCCGACGAAGAAAAACTAGTCATACAGCTTCATGCCATCCTTGGAAATAGGTGGGCTGCAATAGCTTCTCAGTTACCAGGAAGAACAGACAACGAGATCAAGAATTTATGGAACACGCACTTAAAGAAACGTCTGATAAGCAAGGGAATTGATCCACAAACTCATGAACCAATATCCTCATCACACTACTACCCAATTTCCAAATCAAATTCGTCTATCGCCACACGGCACATGGCTCAATGGGAAAGTGCAAGACTTGAAGCAGAAGCAAGGCTCTCAAAAGACTCACCTCTATTCAATAACAACAACACTCCTTTAGCAAGCAACAAATCTGATTCAGACTATTTCCTTAAGATATGGAACTCTGATGTTGGACAATCTTTTCGCGTGGTTCGTAAATCAGACGAAGACGACGACGATAAAACTAGGTGCATAAGTTCAATGTCTCAAGAAGGGTCATCTTGTAATAACAACAAATGTGGATCTGTTTCTGCAACTCCTGCAAGCAATGTGAAGGAAGATTTTGAATGGAGAAACTACAAATTATTTAATCATGTAGGTTGTGATGATTCATCAAGCTCTAATGATCTTGAAGACTCTTCTGATACTGCATTGCAGCTTTTGTTGGATTTTCCTTCTAACAATGACATGAGCTTCTTGGAATGA 882 0.4116 MGRTPCCDKMGLKKGPWTSEEDEVLVSYIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFKPDEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLISKGIDPQTHEPISSSHYYPISKSNSSIATRHMAQWESARLEAEARLSKDSPLFNNNNTPLASNKSDSDYFLKIWNSDVGQSFRVVRKSDEDDDDKTRCISSMSQEGSSCNNNKCGSVSATPASNVKEDFEWRNYKLFNHVGCDDSSSSNDLEDSSDTALQLLLDFPSNNDMSFLE 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00615 293 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vifa4g00615 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vifa4g00615 293 FunFam MYB transcription factor 70 117 - -
Vifa4g00615 293 Gene3D - 69 136 - -
Vifa4g00615 293 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 231 - -
Vifa4g00615 293 Gene3D - 11 68 - -
Vifa4g00615 293 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vifa4g00615 293 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vifa4g00615 293 CDD SANT 16 62 IPR001005 -
Vifa4g00615 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vifa4g00615 293 SUPERFAMILY Homeodomain-like 10 109 IPR009057 -
Vifa4g00615 293 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vifa4g00615 293 CDD SANT 70 113 IPR001005 -
Vifa4g00615 293 SMART sant 13 64 IPR001005 -
Vifa4g00615 293 SMART sant 67 115 IPR001005 -
Vifa4g00615 293 FunFam Myb transcription factor 11 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00615 Vifa-Chr4 176115045 176116931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00615 1 293 MYB Transcription Factor Family AT3G61250 63.300 5.83e-122 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g00615 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00615 K09422 - gmx:100800408 399.438