Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00599 ATGTCTTTCACTGGAACTCTTGATAAATGCAAGGCATGTGACAAGACTGTTTATGTTGTTGATTTGTTAACTCTTGAAAATATTCCTTACCATAAAAACTGCTTCAAATGTAGCCATTGCAAAGGTTGTCTTACGATGAGTACATACTCTTCCATGGATGGAATTCTCTATTGCAAGACACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTTAGCAAGAATTTCGCAAAGTCTTCTGACAAATCAAATGACCTGAATAGGACACCAAGTAGACTATCTTCCATGTTCAGTGGAACCCTGGACAAATGCGCAACTTGCTCTAAAACCGTGTATCCGCTGGAAAAGGTGACACTGGAAGGTGAATGCTATCACAAGAATTGCTTTAGGTGTGCTCATGCAGGGTGTCCTCTGACACATTCAAACTATGCTGCACTTGATGGTGTCCTCTACTGCAGGGTGCATTTTGCGCAACTTTTCATGGAGAAAGGTAACTATAGCCATGTACTCAAATCTGCACACAAGAGGAATGGATCTTCTCCACCTTCTGAACCAATTGAAGTTGTTGAAGAGCCTTCACAATCAGCAGAAGCACCTCAAGACCCACCAGAAGAAACCTCTTGA 624 0.4135 MSFTGTLDKCKACDKTVYVVDLLTLENIPYHKNCFKCSHCKGCLTMSTYSSMDGILYCKTHFEQLFKESGNFSKNFAKSSDKSNDLNRTPSRLSSMFSGTLDKCATCSKTVYPLEKVTLEGECYHKNCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGNYSHVLKSAHKRNGSSPPSEPIEVVEEPSQSAEAPQDPPEETS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00599 207 MobiDBLite consensus disorder prediction 172 207 - -
Vifa4g00599 207 Gene3D Cysteine Rich Protein 100 168 - -
Vifa4g00599 207 FunFam LIM domain and actin-binding 1 98 168 - -
Vifa4g00599 207 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vifa4g00599 207 FunFam LIM domain and actin-binding 1 4 74 - -
Vifa4g00599 207 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vifa4g00599 207 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vifa4g00599 207 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Vifa4g00599 207 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vifa4g00599 207 Gene3D Cysteine Rich Protein 5 72 - -
Vifa4g00599 207 Pfam LIM domain 104 159 IPR001781 -
Vifa4g00599 207 Pfam LIM domain 10 65 IPR001781 -
Vifa4g00599 207 SMART lim_4 103 155 IPR001781 -
Vifa4g00599 207 SMART lim_4 9 61 IPR001781 -
Vifa4g00599 207 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Vifa4g00599 207 PANTHER OS06G0237300 PROTEIN 6 83 - -
Vifa4g00599 207 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00599 Vifa-Chr4 169235570 169236813 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vifa4g00599 LIM 2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00599 - K09377 gmx:100800234 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00599 4 169235570 169236813 Vifa4g00599 4 169235570 169236813 ECH
Vifa5g01484 5 437590352 437591723 Vifa4g00599 4 169235570 169236813 PCT