Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00598 ATGGATATAGCTTTTAGGTTTCCACAGTCGAAAGTAGCTTTCAATGGTTTCGATTCTTGTGTTTCGTTTGGAGGGAGAAGCTTTGGTTATGCTTTTCTTTGTTATTCAAGAAATATGTTGAAATTGGAAACTCATTGTGGAGGAGAGTTCAGAGTTTCAAATTCGAAGCCGAAGCCGATTTCCTCGTGTAGGAGTAGTTATAGTAGTAACTGTTTTAAGGGAAATAGGAGAGTTTGGTTAAAGTGTCAGGGAAATGATACTTTTGGATATGACAATGGAAATGGTAGGAAAGGTTTGAATGAGGGTAATGATTTGTTGTCGATTTCCGGTGCGGAATTAGGCGAACCTTTGGGAGAAGTTGGGGGTGGAGTAGAAGTAGAGGTAGAAAGTGCGGATGAGTTGAAAGAATTGTTGCAGAAGGCTTTGAAAGAGTTAGAAGCTGCTAGAGTGAATAGTATTTTGTTTGAGGAGAAGGTTAAGAAGATAGCGGAGACTGCGATATCTTTGCAGGATGGAGCGGCAAGAGCTTGGAATGATGTTAATTCGAAACTTGATATTATTCAGGAGATTGTGTGTGAGGAGTTTAATGCTAAAGAAGCTGTTCAAAATGCAACGATGGCTCTTTCTTTAGCTGAGGCGAGGCTTCAAGTGGCCGTCGAATCTTTGGAGGTTGTGAGTGAAGATAATGGTTCGGTACGAGATTTGAATGAGAGTGATGGTGGTAATGGTGTAGTGCAAGAGGAGAAAGAGCGTTTGGTTGCTCAGGAAGGTATTAAGGAATGCCAGACAAATTTAGAGAGTTGTGAGGCTGAGCTGAGGCACTTGCAAAGTAGAAAAGAGGAGTTACAGAATGAAGTGAGCATGTTGCATGGAATGGCGGAAAAAGCACAGTTGAATGCTGTGAAAGCGGAAGAGGATGTCACGGACATAATGCATTTAGCTGAGCAAGCTGTTGCCTTTGAACTCGAGGCTGCAAAGCGTGTTAACGATGCAGAAATTGCATTGCAGAGAGCAGAGAAGTCTGTCACTAGTGTTAATGATGATACTGCAGACGCTTTACAAGAAAGAGATGCTGCAGCCCTCCCCGAGGAGGAGAAATTGGTTCAAGATTTTCCTGGTGATGTTTCTGTTAAAGGAGAGCTTGAGTTATCCAGTAATGACGAGTCTTTGCAGGCCACAGATCCACTAGAGACACAGTCTAATAAAACCGGCCAAATCTCGGAAGATATAACTCAATCTGGTTATTTGAGTGATCATGATAATGGACAGCTCAGCTTTGACTCTTCCAAAGAAACCGAACTCGAAGTAGAGAAGTCAAAGAATGTAGCTCAAACAAAAAAACAAGAAACACAGAAAGATTTGAGTAGAGATAATTCATCATCTACTCCCAAGACATCGTTGAAGAAGTCTTCCCGATTTTTTCCGGCATCATTTTTCTCTTCTAGTACAGAAGAGACTGATTACTCACCAGCATCAATTTTCAATGGCCTTGTGGAATCTGCACAGAATCAATTACCCAAGTTCATTGTTGGGTTATTGTTAATTGGAGCAGGGGTCGCCTTCTTTTCCAATAGAGCAGAGAGAAGTTCTCAGCTGCTTCAGCAGCCAGAAGTCATTGTAACCACAGTTGAAGAAGTTTCCTCAAATGCAAGGCCTCTGGTTAGACAACTTCAGGAACTCCCCAATAGAATTAAGAAAGTTATTGCGTCGTTACCCGATCAAGAGGTGAACGACGAGGAAGCCTCCCTCTTTGACATGCTTTGGCTATTACTTGCAAGTGTTATATTTGTCCCACTATTTCAAAAAATTCCTGGAGGCAGTCCTGTTCTTGGTTACTTGGCTGCTGGAATCTTAATTGGGCCTTATGGACTCTCCATCATTCGCAATGTTCACGGGACAAAATCAATCGCTGAATTTGGAGTTGTTTTCCTTTTATTTAATATTGGCCTGGAGCTTTCTGTGGAAAGGCTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCTGCTCAGGTTTTGTTGACTGCCGCAGTTATTGGGTTGGTGGCTCATTATATTTGTGGCCAAGCTGGCCCTGCTGCTATTGTCATCGGGAATGGCCTGGCATTATCATCGACTGCTGTTGTTCTGCAGGTGTTACAGGAGAGAAGCGAGAGCACATCTCGACATGGACGAGCTACATTTTCTGTATTACTTTTTCAGGATTTGGCTGTTGTTGTCTTGCTAATTCTCATACCTCTCATTTCACCTAATTCTTCCAAAGGAGGGGTTGGCTTTCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCCGTTAAGGCTGCAGTTTCCATCACTGCCATAATTGCAGGTGGGCGACTGCTCCTTCGACCTATATATAAGCAGATTGCAGAAAATCAGAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTGTTCTTGGGACCAGCCTTCTCACGGCCAGGGCAGGTCTGTCCATGGCTTTGGGAGCATTTTTGGCTGGTTTACTACTAGCAGAAACTGAATTTTCCTTACAGGTCGAATCTGATATTGCTCCATATCGTGGCCTTCTATTGGGACTTTTCTTTATGACGGTTGGAATGGCAATTGATCCAAAACTTCTTCTCTCAAATTTTCCAGTCATCATAGGGACATTGGGACTCTTGATATGTGGCAAGACACTCTTGGTTGCTTTGATTGGCAAAGTTTTTGGTATTTCACTCATATCTGCCATCAGAGTTGGACTTCTTCTTGCTCCTGGAGGAGAATTTGCATTTGTTGCTTTCGGTGAAGCTGTTAATCAGGGTATAATGTCTTCCCAGTTGTCCTCTTTGCTGTTCCTTGTAGTGGGAATTTCAATGGCCCTTACGCCATGGCTGGCTGAAGGAGGCCAGCTGATTGCTTCCCGTTTTGAGCTACATGATGTTCGAAGCTTATTACCTGTAGAAAGTGAGACAGATGATCTGCGTGATCATATCATTATTTGTGGATTTGGGAGAGTTGGCCAAATCATTGCGCAACTTCTTTCCGAGCGACTCATTCCCTTTGTTGCACTAGATGTGCGAAGTGATAGAGTTGCAATTGGGCGTTCCTTGGATCTCCCTGTGTACTTCGGTGATGCTGGTAGTCGAGAGGTCCTACATAAAGTTGGGGCTGGAAGGGCAAGTGCTGCAGCAGTAACTCTAGATTCCCCTGGTGCAAACTACAGAACGGTTTGGGCTCTGAGCAAACACTTCCCAAACGTGAAGACTTTTGTCCGTGCTCATGATGTTAATCACGGACTGAATTTAGAAAAAGCTGGAGCTACCGCCGTTGTCCCGGAGACTTTGGAACCAAGTCTTCAGCTAGCAGCAGCAGTGCTTTCTGAGGTTAAACTTCCTGCATCAGAGATTGCGGCAACTATTAATGAATTCAGATCCCGCCATCTGGCCGAGCTTACAGAACTATCTGAAACAAGTGGAAGTTCTCTTGGATATGGATATGGATATAATAGAATTATGAGCAAACCCAAAACCCAATCTCCTGATTCAATTGAAGGGTCAACGTGA 3546 0.4337 MDIAFRFPQSKVAFNGFDSCVSFGGRSFGYAFLCYSRNMLKLETHCGGEFRVSNSKPKPISSCRSSYSSNCFKGNRRVWLKCQGNDTFGYDNGNGRKGLNEGNDLLSISGAELGEPLGEVGGGVEVEVESADELKELLQKALKELEAARVNSILFEEKVKKIAETAISLQDGAARAWNDVNSKLDIIQEIVCEEFNAKEAVQNATMALSLAEARLQVAVESLEVVSEDNGSVRDLNESDGGNGVVQEEKERLVAQEGIKECQTNLESCEAELRHLQSRKEELQNEVSMLHGMAEKAQLNAVKAEEDVTDIMHLAEQAVAFELEAAKRVNDAEIALQRAEKSVTSVNDDTADALQERDAAALPEEEKLVQDFPGDVSVKGELELSSNDESLQATDPLETQSNKTGQISEDITQSGYLSDHDNGQLSFDSSKETELEVEKSKNVAQTKKQETQKDLSRDNSSSTPKTSLKKSSRFFPASFFSSSTEETDYSPASIFNGLVESAQNQLPKFIVGLLLIGAGVAFFSNRAERSSQLLQQPEVIVTTVEEVSSNARPLVRQLQELPNRIKKVIASLPDQEVNDEEASLFDMLWLLLASVIFVPLFQKIPGGSPVLGYLAAGILIGPYGLSIIRNVHGTKSIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLLTAAVIGLVAHYICGQAGPAAIVIGNGLALSSTAVVLQVLQERSESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVSITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLFVVLGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMAIDPKLLLSNFPVIIGTLGLLICGKTLLVALIGKVFGISLISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMALTPWLAEGGQLIASRFELHDVRSLLPVESETDDLRDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRSLDLPVYFGDAGSREVLHKVGAGRASAAAVTLDSPGANYRTVWALSKHFPNVKTFVRAHDVNHGLNLEKAGATAVVPETLEPSLQLAAAVLSEVKLPASEIAATINEFRSRHLAELTELSETSGSSLGYGYGYNRIMSKPKTQSPDSIEGST 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00598 1181 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 590 870 IPR004771 GO:0006812|GO:0008324|GO:0016020
Vifa4g00598 1181 Gene3D - 579 965 IPR038770 -
Vifa4g00598 1181 Coils Coil 124 151 - -
Vifa4g00598 1181 FunFam K(+) efflux antiporter 2 chloroplastic 579 965 - -
Vifa4g00598 1181 FunFam K(+) efflux antiporter 2 chloroplastic 987 1151 - -
Vifa4g00598 1181 ProSiteProfiles RCK N-terminal domain profile. 991 1113 IPR003148 GO:0006813
Vifa4g00598 1181 Coils Coil 328 348 - -
Vifa4g00598 1181 MobiDBLite consensus disorder prediction 385 468 - -
Vifa4g00598 1181 Coils Coil 258 299 - -
Vifa4g00598 1181 Gene3D - 988 1151 - -
Vifa4g00598 1181 MobiDBLite consensus disorder prediction 385 423 - -
Vifa4g00598 1181 Pfam Sodium/hydrogen exchanger family 589 959 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vifa4g00598 1181 MobiDBLite consensus disorder prediction 424 454 - -
Vifa4g00598 1181 Pfam TrkA-N domain 992 1105 IPR003148 GO:0006813
Vifa4g00598 1181 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 988 1129 IPR036291 -
Vifa4g00598 1181 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 165 1171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00598 Vifa-Chr4 167947758 167959629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00598 80 1174 Inorganic Solute Cotransporters AT4G00630 70.901 0.0 1392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00598 K03455 - gmx:100791174 1608.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00598 4 167947758 167959629 Vifa4g00598 4 167947758 167959629 ECH
Vifa5g01476 5 436661904 436676718 Vifa4g00598 4 167947758 167959629 PCT