Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00568 ATGGAGGAAGAGAATAAAGAAATTAAATCATTTAAGGATTTAGGCTTAAATGACTCATTGGTGGAAGCTTGTGAAAAGCTGGGTTGGAAGAATCCGCTAAAGATTCAAGTAGAAGCAATTCCCCAAGCTCTACAAGGGAAAGATGTGATTGGAATTTCCCAAACGGGTTCTGGTAAGACTGGAGCTTTTGTTCTTCCTATATTGCATGCCCTCTTAGAAGCACCCTTTTCTCTCCGGAACAATTTCTTTGCATGTGTAATGTCTCCCACAAGGGAGCTTGCTTTTCAAATTGCTGAACAATTTCAAGCTCTAGGTTCTAAAATAGGTGTCAAGTGTGCTGTGCTTGTTGGACAGATTAACATGGTAACGCAGGCCATCGAGATTGCAAAGCGACCTCATATTATTGTTGGGACACCTGGACGAGTCTTGGATCACCTAAAAAACACCAGAGGATTTTCTCTTGATAAATTGAAATACTTGGTCTTAGATGAGGCAGACAGGCTGTTGGATGAGGACTTTGAGAAAACAATTACCGAGTTTTTAGAATTTATTCCTCGTGAGCGGAAAACATTTCTTTTTTCAGCTACGATGACAAAGAAGGTCCAGAAGCTCCAAAAGGCTTGTTTAAGGAAGCCCGTGAAGATTGAAGTATCATCCAAATATTCTACTGTGGACACACTGAAGCAGCAGTATCTCCTTGTGCCAGCAAAACATAAGGATTGCTACCTTGTATACATTCTCACTGAAATGGCTGGAAGCACATCAATGGTATTCGCCGAGAAATGTGAGACAACATGGCTTCTGGCTTTGATTCTTAAAAATCTTGGTTTGAAAGCCATCTCAATTAACGGTCATATGAGTCAGCCGAAGAGACTTGAAGCCTTGGAGAAATTCAAGTCTAGGGAGTGCAATATTCTCGTTTGTTCTGACGTAGCCAGTAGGGGACTTGATATTCCAGCGGTAGATATGGTGATTAACTATACCATTCCCAAAAGCAAAGTTTATGTACATCGTGTGGGAAGAACTGCTCGTGCAGGGCGTTCTGGTGTTGCCATTTCCCTTGTGAACCAATATGAAGTGGCATCGTACATGAAGATAGAGAAGTTTATAGGCAAGAAGCTACCAGAGTATCCTGCAGAGGAAGTGGAAGTTTTGTTTTTGAAAGAGCGCGTTAGTGAGGCCAAAAGATCAGCAGACAAGGAAATGAAGGAATCCAATGAGAAGAAGAAACGGAGGAGTGAAGGAGATTTTAGTGAAGAGGAGGAGGACGACATTGAGAAATACTTGGGTGTCAAAAATAAAAAACCATCCAAGAAGTTCAGAAGATAG 1329 0.4146 MEEENKEIKSFKDLGLNDSLVEACEKLGWKNPLKIQVEAIPQALQGKDVIGISQTGSGKTGAFVLPILHALLEAPFSLRNNFFACVMSPTRELAFQIAEQFQALGSKIGVKCAVLVGQINMVTQAIEIAKRPHIIVGTPGRVLDHLKNTRGFSLDKLKYLVLDEADRLLDEDFEKTITEFLEFIPRERKTFLFSATMTKKVQKLQKACLRKPVKIEVSSKYSTVDTLKQQYLLVPAKHKDCYLVYILTEMAGSTSMVFAEKCETTWLLALILKNLGLKAISINGHMSQPKRLEALEKFKSRECNILVCSDVASRGLDIPAVDMVINYTIPKSKVYVHRVGRTARAGRSGVAISLVNQYEVASYMKIEKFIGKKLPEYPAEEVEVLFLKERVSEAKRSADKEMKESNEKKKRRSEGDFSEEEEDDIEKYLGVKNKKPSKKFRR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00568 442 Gene3D - 221 392 IPR027417 -
Vifa4g00568 442 MobiDBLite consensus disorder prediction 393 423 - -
Vifa4g00568 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 367 IPR027417 -
Vifa4g00568 442 CDD SF2_C_DEAD 227 355 - -
Vifa4g00568 442 MobiDBLite consensus disorder prediction 393 417 - -
Vifa4g00568 442 Pfam DEAD/DEAH box helicase 34 204 IPR011545 GO:0003676|GO:0005524
Vifa4g00568 442 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 5 426 - -
Vifa4g00568 442 SMART ultradead3 28 230 IPR014001 -
Vifa4g00568 442 Pfam Helicase conserved C-terminal domain 242 346 IPR001650 -
Vifa4g00568 442 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 161 169 IPR000629 -
Vifa4g00568 442 Gene3D - 1 219 IPR027417 -
Vifa4g00568 442 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 242 385 IPR001650 -
Vifa4g00568 442 CDD DEADc_DDX47 10 216 IPR044765 GO:0005524
Vifa4g00568 442 SMART helicmild6 266 346 IPR001650 -
Vifa4g00568 442 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Vifa4g00568 442 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 215 IPR014001 -
Vifa4g00568 442 Coils Coil 388 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00568 Vifa-Chr4 163967059 163971601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00568 8 385 Eukaryotic Initiation Factors Gene Family AT3G19760 28.421 3.92e-56 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00568 K14777 - gmx:100775796 642.499