Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00563 ATGCCTCGTGGAACGCTTGAAGTTGTTTTGATCAGTGCCAAAGGCCTTGAAGACAATGATTTTCTCTCTAGCATAGATCCTTATGTGATCCTTACTTACAGAGCACAGGAGCACAAGAGTAATGTGCAAGAAGGTGCTGGATCCAACCCTCAGTGGAATGAGACCTTTCTTTTCACTGTTTCTGATTCTACTTCTGAGCTAAATCTGAAGATAATGGAAAAGGACAACTATAATAATGATGATAATATTGGAGAAGTAACAATTCCCTTGGAGGCGGTGTTTGAAGAGGGTAGACTTCCAGAGAGTGTTTACAAACTTGTGAAAGACGAAGAATATTGTGGTGAGATTAAGGTGGTTCTTACTTTTACACCTGAGAGAAATGAAGAACAGGGTTACAATGAAGAGGAAGAGAGTGGTGGATGGAAAGAATCAGCTAGTGAATTTTGA 447 0.4004 MPRGTLEVVLISAKGLEDNDFLSSIDPYVILTYRAQEHKSNVQEGAGSNPQWNETFLFTVSDSTSELNLKIMEKDNYNNDDNIGEVTIPLEAVFEEGRLPESVYKLVKDEEYCGEIKVVLTFTPERNEEQGYNEEEESGGWKESASEF 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00563 148 PANTHER C2 DOMAIN-CONTAINING 1 136 - -
Vifa4g00563 148 MobiDBLite consensus disorder prediction 125 148 - -
Vifa4g00563 148 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Vifa4g00563 148 Gene3D C2 domain 2 125 IPR035892 -
Vifa4g00563 148 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 127 IPR035892 -
Vifa4g00563 148 MobiDBLite consensus disorder prediction 133 148 - -
Vifa4g00563 148 SMART C2_3c 5 102 IPR000008 -
Vifa4g00563 148 Pfam C2 domain 4 99 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00563 Vifa-Chr4 162294282 162295202 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00563 4 94 C2H2 Transcription Factor Family AT4G21160 30.769 1.97e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00563 - - gmx:100500006 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00563 4 162294282 162295202 Vifa4g00563 4 162294282 162295202 ECH