Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00561 ATGCCTCGTGGAACACTTCATGTTAATTTGATAGCTGCCAAAGGCTTAAACAACAATGATTTTCTCACCAATGTAGATCCTTATGTCATTCTCACATATCGATCACAGGAGCACAAAAGCAGTGTGGCACAAGGTGCTGGATCTAACCCAAAGTGGAATGAGGTATTTCTTTTTACAGTTTCTGATGATGTTTGTGAAATTGATATGAAATTAATGGATGAAGATGGTTTTACCCAGGATGATTTTCTTGGCAGGGCAATAATTCCTTTCCATTCAGTGTTTTATGAAGGCATCATCCCAACAGCTGTTTACAGTGTAGTTAATGACAATAAAGAATATTGTGGAGAGATTCATGTGGCTTTCACTTTTACTCCTGAGGAGTGA 384 0.3802 MPRGTLHVNLIAAKGLNNNDFLTNVDPYVILTYRSQEHKSSVAQGAGSNPKWNEVFLFTVSDDVCEIDMKLMDEDGFTQDDFLGRAIIPFHSVFYEGIIPTAVYSVVNDNKEYCGEIHVAFTFTPEE 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00561 127 Gene3D C2 domain 2 126 IPR035892 -
Vifa4g00561 127 Pfam C2 domain 4 92 IPR000008 -
Vifa4g00561 127 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 125 IPR035892 -
Vifa4g00561 127 PANTHER C2 DOMAIN-CONTAINING 1 125 - -
Vifa4g00561 127 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Vifa4g00561 127 SMART C2_3c 5 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00561 Vifa-Chr4 161731209 161732620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00561 4 88 C2H2 Transcription Factor Family AT4G21160 31.765 4.06e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00561 - - adu:107473142 176.407