Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00560 ATGAATTTCTTGCTCCTCGCTGGCAAAAAATTCAAGAGGGAAACATCACCGTTGGAAGAGAGTAGCATTAACTTACTTAAAATAGCCAAAGCAATCTCGAGCTTTATAGCAGTTGATATTACCCACACATCGAAGGAAGCTCAAAGCACAGGGAAAATGGTCTTGCCCTTTTTGCCACTGTCAATAGCATTTAAGGATGTCCAGTATTTTGTTGACACTCCTCCGGAGATGAAAAAGCATGGTTCGAATGAGAAAATTTTACAATTGCTCTGCGATATCACGGGAGCATTTAGGCAAGGAATCCTTACTGCTTTGATGGGAGTCAGTGGAGCAGGAAAGACAACACTCATGGACGTGCTTTCAGGAAGAAAAACTGGAGGTATCATTGAAGGAGATATAAGAATTGGAGGGTACCCTAAAGTTCAAAAGACATTTGCAAGAGTTTCAGGTTACTGTGAGCAGAACGACATACATTCTCCATATATAACAGTTGAAGAATCTGTTCGATACTCAGCTTGGTTGCGGTTGCCAAGCGAGATTGATTCAGCTACAAAAGGGATATTTGTTGAAGAAGTCCTTGAAACAATTGAACTTGATGATATAAAGGATAACTTAGTTGGTATCGCTGGTCAAAGTGGCTTATCTACCGAGCAACGTAAAAGGCTAACTATAGCAGTAGAGCTTGTATCCAATCCTTCAATAATTTTTATGGATGAACCTACATCTGGTTTGGATGCCCGAGCTGCTGCTGTAGTTATGCGTGCAGTGAAGAATGTTGTTGGCACTGGTAGGACCACAGTTTGCACCATACATCAGCCAAGCATCGATATATTTGAAACTTTTGATGAGTTGATTCTAATGAAATCTGGAGGCAAGATCATTTATAATGGAATGCTAGGCCATCATTCAAATAGACTGATTGAATATTTTCAGAGTATACCGGGAGTTCCAAAGATCAAGGACAATTATAATCCTGCAACCTGGATGTTGGAAGCTACTTCTGCATCTGTAGAGTATATCTAA 1023 0.4018 MNFLLLAGKKFKRETSPLEESSINLLKIAKAISSFIAVDITHTSKEAQSTGKMVLPFLPLSIAFKDVQYFVDTPPEMKKHGSNEKILQLLCDITGAFRQGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQKTFARVSGYCEQNDIHSPYITVEESVRYSAWLRLPSEIDSATKGIFVEEVLETIELDDIKDNLVGIAGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVGTGRTTVCTIHQPSIDIFETFDELILMKSGGKIIYNGMLGHHSNRLIEYFQSIPGVPKIKDNYNPATWMLEATSASVEYI 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00560 340 Pfam ABC transporter 92 242 IPR003439 GO:0005524
Vifa4g00560 340 CDD ABCG_PDR_domain2 59 297 IPR034003 -
Vifa4g00560 340 Gene3D - 76 309 IPR027417 -
Vifa4g00560 340 PANTHER ATP-BINDING CASSETTE TRANSPORTER 46 338 - -
Vifa4g00560 340 SMART AAA_5 99 291 IPR003593 GO:0016887
Vifa4g00560 340 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 62 315 IPR003439 GO:0005524
Vifa4g00560 340 FunFam ABC transporter G family member 34 76 308 - -
Vifa4g00560 340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 297 IPR027417 -
Vifa4g00560 340 Pfam ABC-2 type transporter 271 328 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00560 Vifa-Chr4 160533312 160535424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00560 87 274 Calmodulin-binding Proteins AT2G36910 28.141 9.12e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00560 K08711 - gmx:100819411 536.184