Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00556 ATGAAGAGAACGTATATTGTTTGGATTGTTGCATCAGTCTTTGCCCTCACTGTGTTTCTCCTCACTCAGCTCACCTCCATCAAACTGCAACCCATTCCGCATCACCATCACCACCCAACACCAGTACAACACTCATTTTTCTTCCTCCGTCGTCACTCTCTCTTTCTCTATGCGAAAATGGATCTGAGCGAAGAAGTTAGGCAAGCTCACAAGCGAGAGTTCGCCGATTTCCTGGACCAAGATATCGGAAAGAGCATTTACATGGACGCAATCAAAGCTCTAATCAACCACAAGCGCCGTTGTCTCATAGTCAACATCTCCGATCTCCACAACTACCAGGATTTGGGTAACAGGATTCTGAGAAATCCGAGTGAGTATATGCAGTCATTCTGTGATGCGGTGACTGATGCTGCTCGTGCTATTGATCCAAAGTATTTGAAGGAAGGGGAACATGTTCTTGTGGGACTTGAAGGCCCTTTTGTTTCTCGCAGGGTTACTCCTAGGGATCTTCTTTCTGAATTCATAGGTTCTATGGTTTGTGTTGAGGGCATTATCACCAAATGTTCTCTTGTAAGGCCAAAGGTTGTTAAAAGTGTTCATTTCTGCCCAACCACTGGTAGCTTCACGCACCGTGATTATCGAGATATTGCATCTAATTTGGGTTTGCCCACCGGGTCTGTGTATCCCACAAGGGATGAAAATGGCAACTTACTTGTGACCGAGTATGGGCTGTGCAAATACAAGGATCATCAAACTTTGTCCATGCAGGAAGTCCCTGAAAATTATGCGCTTGGTCAGCTCCCAAGAACAGTGGATGTCATAGCAGAGGACGACCTTGTTGATTCTTGCAAGCCTGGGGATCGTGTGGCTGTTGTTGGGATATATAAGGCTCTTCCAGGAAAAAGCAAAGGCAGTGTTAATGGTGTATTCAGGACTGTGCTCATAGCCAACAATGTAGCTCTTCTCAATAAAGAAGCTAATGCTCCAATCTACAGCCCTGATGACCTTAAAGAGATAAAAAGCAATTGTTATTGGTATTTTCACGAGGAAGAAAGAGAATAG 1062 0.4463 MKRTYIVWIVASVFALTVFLLTQLTSIKLQPIPHHHHHPTPVQHSFFFLRRHSLFLYAKMDLSEEVRQAHKREFADFLDQDIGKSIYMDAIKALINHKRRCLIVNISDLHNYQDLGNRILRNPSEYMQSFCDAVTDAARAIDPKYLKEGEHVLVGLEGPFVSRRVTPRDLLSEFIGSMVCVEGIITKCSLVRPKVVKSVHFCPTTGSFTHRDYRDIASNLGLPTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSMQEVPENYALGQLPRTVDVIAEDDLVDSCKPGDRVAVVGIYKALPGKSKGSVNGVFRTVLIANNVALLNKEANAPIYSPDDLKEIKSNCYWYFHEEERE 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00556 353 Gene3D - 194 248 - -
Vifa4g00556 353 Pfam MCM OB domain 168 298 IPR033762 -
Vifa4g00556 353 SUPERFAMILY Nucleic acid-binding proteins 72 318 IPR012340 -
Vifa4g00556 353 Gene3D - 61 158 - -
Vifa4g00556 353 Pfam MCM N-terminal domain 71 142 IPR027925 -
Vifa4g00556 353 Gene3D - 168 298 IPR012340 -
Vifa4g00556 353 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 65 340 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifa4g00556 353 SMART mcm 163 353 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifa4g00556 353 FunFam DNA helicase 64 163 - -
Vifa4g00556 353 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 240 254 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vifa4g00556 353 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 266 278 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vifa4g00556 353 FunFam DNA helicase 194 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00556 Vifa-Chr4 157819168 157820229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00556 60 341 Core DNA Replication Machinery Family AT5G46280 77.032 9.57e-158 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00556 K02541 - gmx:100811545 506.908