Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00555 ATGGATCTGAGCGAAGAAGTTAGGCAAGCTCACAAGCGAGAGTTCGCCGATTTCCTGGACCAAGATATCGGAAAGAGCATTTACATGGACGCAATCAAAGCTCTAATCAACCACAAGCGCCGTTGTCTCATAGTCAACATCTCCGATCTCCACAACTACCAGGATTTGGGTAACAGGATTCTGAGAAATCCGAGTGAGTATATGCAGTCATTCTGTGATGCGGTGACTGATGCTGCTCGTGCTATTGATCCAAAGTATTTGAAGGAAGGGGAACATGTTCTTGTGGGACTTGAAGGCCCTTTTGTTTCTCGCAGGGTTACTCCTAGGGATCTTCTTTCTGAATTCATAGGTTCTATGGTTTGTGTTGAGGGCATTATCACCAAATGTTCTCTTGTAAGGCCAAAGGTTGTTAAAAGTGTTCATTTCTGCCCAACCACTGGTAGCTTCACGCACCGTGATTATCGAGATATTGCATCTAATTTGGGTTTGCCCACCGGGTCTGTGTATCCCACAAGGGATGAAAATGGCAACTTACTTGTGACCGAGTATGGGCTGTGCAAATACAAGGATCATCAAACTTTGTCCATGCAGGAAGTCCCTGAAAATTATGCGCTTGGTCAGCTCCCAAGAACAGTGGATGTCATAGCAGAGGACGACCTTGTTGATTCTTGCAAGCCTGGGGATCGTGTGGCTGTTGTTGGGATATATAAGGCTCTTCCAGGAAAAAGCAAAGGCAGTGTTAATGGTGTATTCAGGACTGTGCTCATAGCCAACAATGTAGCTCTTCTCAATAAAGAAGCTAATGCTCCAATCTACAGCCCTGATGACCTTAAAGAGATAAAAAGCAATTGTTATTGGTATTTTCACGAGGAAGAAAGAGAATAG 885 0.4441 MDLSEEVRQAHKREFADFLDQDIGKSIYMDAIKALINHKRRCLIVNISDLHNYQDLGNRILRNPSEYMQSFCDAVTDAARAIDPKYLKEGEHVLVGLEGPFVSRRVTPRDLLSEFIGSMVCVEGIITKCSLVRPKVVKSVHFCPTTGSFTHRDYRDIASNLGLPTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSMQEVPENYALGQLPRTVDVIAEDDLVDSCKPGDRVAVVGIYKALPGKSKGSVNGVFRTVLIANNVALLNKEANAPIYSPDDLKEIKSNCYWYFHEEERE 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00555 294 Gene3D - 135 189 - -
Vifa4g00555 294 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vifa4g00555 294 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vifa4g00555 294 Pfam MCM OB domain 109 239 IPR033762 -
Vifa4g00555 294 SMART mcm 104 294 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifa4g00555 294 FunFam DNA helicase 135 189 - -
Vifa4g00555 294 SUPERFAMILY Nucleic acid-binding proteins 13 259 IPR012340 -
Vifa4g00555 294 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 8 281 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifa4g00555 294 Gene3D - 109 239 IPR012340 -
Vifa4g00555 294 Gene3D - 3 99 - -
Vifa4g00555 294 Pfam MCM N-terminal domain 12 83 IPR027925 -
Vifa4g00555 294 FunFam DNA helicase 5 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00555 Vifa-Chr4 157819168 157820052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00555 1 282 Core DNA Replication Machinery Family AT5G46280 77.032 7.82e-159 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00555 K02541 - gmx:100811545 506.908