Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00542 ATGAGTTTTGGGGGTTTTGTAGAGAACAATTCAGGAGGTGGTGGAGGTGTGAGAAACATAGGAGAAATTTCCTACAACAACGAAAGAATGCCATTTGGTTCATTCTCACAACCTCGTCTTGTTACTACTCCAACTTTGGCTAAATCCATGTTCAACTCATCTGGATTGTCACTTGCACTTCAAACTAATATTGATGGACAAGAAGATGTGAATAGATCAATGCATGAGAATTTTGAGCAAAATGGTTTGAGAAGGAGTAGAGAAGAGGAGCAAAGTAGATCTGGTAGTGATAACTTGGATGGTGTTTCTGGTGATGAACAAGATGCTGATGATAAACCTCCTAGGAAAAAGAGATATCACCGACACACTCCTCAACAGATTCAAGAGCTTGAAGCTTTGTTTAAGGAGTGTCCTCACCCAGATGAAAAGCAAAGATTGGAACTTAGCAAAAGGCTTTGTTTGGAAACAAGACAAGTTAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAAACTCAATTGGAAAGGCATGAGAACTCATTGCTTAGGCAAGAGAATGATAAGCTAAGAGCTGAGAATATGTCTATAAGGGATGCAATGAGGAATCCTATATGTTCGAATTGTGGTGGTCCAGCTATAATCGGCGAGATTTCACTTGAGGAACAGCATCTTCGAATCGAGAATGCAAGGTTGAAAGATGAGCTAGATAGAGTTTGTGCACTGGCTGGGAAGTTTTTAGGCCGTCCAATTTCTTCGTTACCTAACTCAAGTTTAGAACTTGGTGTTGGAGGAAACAACAATGGTTTTAATGTGATGAACAATGTTTCTTCAGCATTACCTGATTTTAGTGGAGGGATGAATAATAACCCTCTAGCCATTGTGTCTCCTTCGACTAGGCCAACAACTTTGGTGGGTGGATTTGATAGATCGGTCGAAAGGTCTATGTTTCTTGAGCTTGCTTTGGCTGCGATGGATGAGTTGGTTAAGATGGCTCAAACTAGTGAGCCTCTTTGGATTAGGAGTCTAGAAGGGGGAAGGGAGATTTTGAACCATGATGAATATTCAAGGACTTTCACTCCTTGCATTGGTTTGAGACCGAATGGTTTTGTCTCTGAGGCCTCTAGAGAGACCGGCATGGTCATAATCAATAGCTTGGCCCTTGTCGAGACTCTTATGGACTCGGATCGATGGATCGAGATGTTTCCATGTATCATTGCAAGAACCTCAACAACCGAAGTGATATCTAATGGAATAAACGGAACAAGAAATGGCGCACTTCAACTAATGCAAGCTGAACTTCACGTGCTATCACCTTTAGTTCCGGTTCGCGAGATAAACTTCCTTAGGTTTTGCAAGCAGCATGCAGAAGGAGTTTGGGCTGTAGTCGACGTGTCTGTCGACACCATCAGAGAAACTTCCGGCGCTACAAGTTTTATGAACTGCAGGAAGCTTCCTTCTGGTTGTGTTGTGCAAGATATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAACATGCAGAATATGAAGAAAACACAGTCCACCAGCTTTATAGACCATTGTTGAGTTCAGGTATGGGATTCGGTGCGGCACGTTGGGTCGCTACTCTACAACGCCAATGCGAGTGTCTTGCCATATTAATGTCCTCCGCCGCACCTTCTCGAGACCACTCCGCAATAACTGCAGGAGGAAGGCGGAGCATGCTGAAGCTCGCACAGCGAATGACGAACAACTTCTGCGCGGGGGTATGTGCCTCCACAGTCCACAAATGGAACAAGCTGAGTCCCGGAAACGTGGACGAAGATGTAAGAGTGATGACACGTAAAAGCGTCGACGATCCTGGCGAGCCTCCAGGGATTGTGTTGAGTGCAGCAACATCAGTATGGCTCCCAGTTTCGCCTCAAAGACTGTTCGACTTTCTGCGCGACGAGAGGCTCCGTAGCGAATGGGATATACTATCCAACGGTGGTCCCATGCAAGAAATGGCTCATATTGCCAAAGGACAAGATCATGGCAACTGCGTTTCTCTTCTCCGTGCTAGTGCTATGAATTCGAACCAGAGTAGTATGCTGATACTACAAGAAACATGCATAGACGAGGCGGGGTCGCTTGTAGTTTACGCGCCGGTGGATATTCCGGCCATGCATGTTGTGATGAACGGTGGCGATTCAGCTTACGTTGCTCTGTTACCGTCTGGGTTTGCGGTCGTACCCGATGGGCCCGGGTCTCGTGGGCCGGAGAATGGGCCGACAGCAAACGGAGGCGAGGCTCGTGTTAGCGGATCACTTTTAACAGTGGCATTTCAGATCCTTGTGAATAGTCTTCCCACGGCAAAACTCACCGTGGAATCAGTCGAAACAGTGAACAATCTCATTTCTTGCACCGTTCAGAAAATCAAAGCTGCACTTCATTGTGAAAGCTGA 2421 0.4564 MSFGGFVENNSGGGGGVRNIGEISYNNERMPFGSFSQPRLVTTPTLAKSMFNSSGLSLALQTNIDGQEDVNRSMHENFEQNGLRRSREEEQSRSGSDNLDGVSGDEQDADDKPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLPNSSLELGVGGNNNGFNVMNNVSSALPDFSGGMNNNPLAIVSPSTRPTTLVGGFDRSVERSMFLELALAAMDELVKMAQTSEPLWIRSLEGGREILNHDEYSRTFTPCIGLRPNGFVSEASRETGMVIINSLALVETLMDSDRWIEMFPCIIARTSTTEVISNGINGTRNGALQLMQAELHVLSPLVPVREINFLRFCKQHAEGVWAVVDVSVDTIRETSGATSFMNCRKLPSGCVVQDMPNGYSKVTWVEHAEYEENTVHQLYRPLLSSGMGFGAARWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLSPGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAVVPDGPGSRGPENGPTANGGEARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00542 806 FunFam Homeobox-leucine zipper protein GLABRA 2 318 541 - -
Vifa4g00542 806 Pfam START domain 318 542 IPR002913 GO:0008289
Vifa4g00542 806 SMART START_1 318 542 IPR002913 GO:0008289
Vifa4g00542 806 MobiDBLite consensus disorder prediction 78 95 - -
Vifa4g00542 806 CDD homeodomain 115 173 IPR001356 GO:0003677
Vifa4g00542 806 ProSiteProfiles 'Homeobox' domain profile. 113 173 IPR001356 GO:0003677
Vifa4g00542 806 SUPERFAMILY Homeodomain-like 101 173 IPR009057 -
Vifa4g00542 806 Coils Coil 167 199 - -
Vifa4g00542 806 MobiDBLite consensus disorder prediction 78 123 - -
Vifa4g00542 806 SUPERFAMILY Bet v1-like 570 799 - -
Vifa4g00542 806 Gene3D - 102 189 - -
Vifa4g00542 806 CDD START_ArGLABRA2_like 313 541 - -
Vifa4g00542 806 ProSiteProfiles START domain profile. 309 545 IPR002913 GO:0008289
Vifa4g00542 806 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 112 803 IPR042160 -
Vifa4g00542 806 ProSitePatterns 'Homeobox' domain signature. 148 171 IPR017970 GO:0000981|GO:0006355
Vifa4g00542 806 SUPERFAMILY Bet v1-like 311 542 - -
Vifa4g00542 806 FunFam Homeobox-leucine zipper protein HDG1 103 189 - -
Vifa4g00542 806 SMART HOX_1 114 177 IPR001356 GO:0003677
Vifa4g00542 806 Pfam Homeodomain 116 171 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00542 Vifa-Chr4 151922715 151927440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00542 1 806 Homeobox Transcription Factor Family AT3G61150 65.097 0.0 1040
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa4g00542 START 9.9e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00542 K09338 - gmx:100811873 1340.48