Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00541 ATGAATATGATGCGTCGTCTCAAGAGCATTGCTTCGGGGAGGACTTCGATTTCTTCAGATCCTGGAGGGGATTCTAATTCGAAAAGAGCTAAGTTTGATCAAGAAACCGAGAAGGTTTTTTCAGGGAGGGGAACAAATACTTTAAGTAGAAGTGTTCGGGAGCAGCGTGTGGAAGCATCAAAAGAAGCTACAGTTGGGAGTTCTAATGTAGCTGCAGTAACGAAGACTGAGAAATCCGGTTTTGATGAACTTCCGAAAGAATTACATGAGATGAAAATTAGAGACGAGAAAAGTACGAACAACAACGAGAAGGAAATAGAAGCAACTACAGTGAGTGGCAATGGAACAGAAACAGGTCAAATTATTACCACAACTATTAGTGGCCGAGATGGACAACCAAAACAGACAATCTCATACATGGCTGAGCGCGTGGTCGGAACTGGCTCTTTCGGTGTTGTTTTTCAGGCTAAGTGCCTTGAAACCGGTGGAGCGGTTGCCATAAAAAAAGTGTTGCAAGACAAGAGATATAAGAACAGGGAACTCCAAGTTATGCGTATGGTTGATCATCCTAATGTTGTGAAGTTGAAGCACTGTTTCTATTCAACAACCGAAAAAGATGAGCTATACCTTAACCTCGTTTTGGAGTATGTACCTGAAACTGTTTACAAAGTTTCAAAGAACTATAGCCGGACGCACCAACATATGCCTATTATTTACGTTCAGCTGTATACATACCAGATTTTACGGGGATTAAATTATTTACATGAAGTGATTGGCGTTTGTCATCGAGACATCAAACCACAGAACCTATTGGTCAATCAACAGACACATCAGTTGAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAACCCAACATTTCGTACATATGCTCAAGATATTATAGAGCTCCGGAGCTTATATTTGGAGCAACTGAATATACAACTGCTATTGATATGTGGTCTGCTGGTTGTGTCTTGGCTGAGCTCCTTCTAGGACAGGCATTGTTTCCGGGAGAGAGTGGAGTTGATCAGCTGGTGGAGATCATTAAGGTCTTGGGAACACCAACCAGAGAAGAAATAAGGTGCATGAATCCAAACTACAATGAATTTAAGTTCCCGCAGATTAAAGCGCACCCGTGGCACAAGCTTTTTCACAAGAGAATGCCATCTGAAGCAGTGGATCTAGTTTCAAGGTTGCTTCAGTATTCTCCACATCTGCGTTGCACCGCATTGGCGGCATGCGCACACCCGTTCTTCGATGATCTGCGAGACCCAAAAGCAAGCCTGCCAAATGGACAACCTCTACCTCCTTTGTTCAACTTCACACCTCAAGAACTGGTAAATGTGCCCGACGATTTGCGTCAACGTCTCATTCCTGAGCATGCAAGGAGTTAA 1407 0.4321 MNMMRRLKSIASGRTSISSDPGGDSNSKRAKFDQETEKVFSGRGTNTLSRSVREQRVEASKEATVGSSNVAAVTKTEKSGFDELPKELHEMKIRDEKSTNNNEKEIEATTVSGNGTETGQIITTTISGRDGQPKQTISYMAERVVGTGSFGVVFQAKCLETGGAVAIKKVLQDKRYKNRELQVMRMVDHPNVVKLKHCFYSTTEKDELYLNLVLEYVPETVYKVSKNYSRTHQHMPIIYVQLYTYQILRGLNYLHEVIGVCHRDIKPQNLLVNQQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSAGCVLAELLLGQALFPGESGVDQLVEIIKVLGTPTREEIRCMNPNYNEFKFPQIKAHPWHKLFHKRMPSEAVDLVSRLLQYSPHLRCTALAACAHPFFDDLRDPKASLPNGQPLPPLFNFTPQELVNVPDDLRQRLIPEHARS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00541 468 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Vifa4g00541 468 Gene3D Transferase(Phosphotransferase) domain 1 219 467 - -
Vifa4g00541 468 SMART serkin_6 139 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00541 468 FunFam Glycogen synthase kinase-3 beta 123 218 - -
Vifa4g00541 468 CDD STKc_GSK3 134 426 IPR039192 -
Vifa4g00541 468 MobiDBLite consensus disorder prediction 1 63 - -
Vifa4g00541 468 MobiDBLite consensus disorder prediction 9 25 - -
Vifa4g00541 468 SUPERFAMILY Protein kinase-like (PK-like) 138 450 IPR011009 -
Vifa4g00541 468 Pfam Protein kinase domain 139 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00541 468 ProSitePatterns Protein kinases ATP-binding region signature. 145 169 IPR017441 GO:0005524
Vifa4g00541 468 ProSiteProfiles Protein kinase domain profile. 139 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00541 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Vifa4g00541 468 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 103 467 - -
Vifa4g00541 468 MobiDBLite consensus disorder prediction 39 53 - -
Vifa4g00541 468 FunFam Shaggy-related protein kinase kappa 219 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00541 Vifa-Chr4 151172815 151176065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00541 145 433 Core Cell Cycle Gene Families AT1G76540 36.364 2.29e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vifa4g00541 Pkinase 1.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00541 K00924 - gmx:100811346 799.66