Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00524 ATGAAACTTCACTCTTCTCTTCTCTTCTTTCATGTCTTCTTCCAATTCTATACTCTTTCTGCTACTCTCAACTCAGATGGCTTAGCACTTTTATCATTCAAATCTCACTGGACATCACTTCCACCTCTCATAAACTCAACATGGATTCCATCTCATTCAACACCATGTTCATGGGCTGGTCTCAAATGCAACTCTTTCCACCGTGTTATCTCTCTCAACCTTTCCTATCTTGATATTTACGGTCAACTAGGGCCTGAAGTTGCAAACTGCACACAACTCCAACACTTAGACCTTAGTTACAACTACTTCAATGGCCAAATACCTTACTCTTTCACTAACCTTCACAAACTCAAATATCTTGACCTTTCTGTTAATCTTCTCAATGCTCCATTCCCTCATTTCTTGTCTCAAATCCCTCACCTCAAGCTTCTTGATCTCTCTTACAACCAACTTCACGGTTCCATTTCAACTACTATTGCCAACATGACTCATCTCCAAGAATTGTACCTCAAGTTTAACAACTTGTCTGGTGCAATTCCTTCATCTATTGGGAACTGTACTCAGTTACAAGACTTGTATTTGAATGATAATCAGTTGGAGGGTGTTCTTCCTTACAGTCTCAACAATCTCAATCATCTTCTTAACTTTGATGTTGCCAACAATAAACTAACAGGTGCTATTCCATTGTGTTTTTCTGGTTGTAGAAATTTACAGTTTTTGGATATCTCATTCAATGATTTTGGTAGTGGCCTTCCATATAGCATTGGTAATTGTACTGCTTTATCACAATTTGCTGCTGTGAAATCTAACTTGGTTGGAGCTATTCCATCTTCCATTGGTCTGCTCACCGAGCTTTCAATTCTTCGCCTTTCCGAGAATCATTTGTCTGGTAAAATACCTTCTGAAATAGGTAACTGTGAGTCTTTGACTGAGTTGCATTTGTACTCCAATCGACTTGATGGAAACATTCCGAGTGAAATGGGAAAACTCGGCGAATTACGCGACCTTGAACTGTTTTCTAATCAATTGAGTGGAGAAATTCCGCTTGAGATATGGAAGATTCGACATCTCAAGCATCTGTTTGTGTATAATAATAGCCTTTCTGGTGAACTTCCTGTGGAGATGACAGAGCTCAAGAACCTTAAGAACATTTCATTGTTTAACAACATGTTCTCTGGAGTTATACCTCAAAGCTTGGGAATTAACAGCAGTTTGGTGCAGTTGGACTTTGTAAACAATAGGTTCACCGGCAACCTGCCACCAAATCTTTGTTTTGGAAGAAACTTGAGTGTTTTGAATATGGGAATCAATCGATTTCGAGGAAGAATACCTCCTGATGTTGGAAGATGCACAACTCTAAGAAGGATCATTCTTAAACAAAACAAATTTACTGGGCCTCTTCCTGATTTTGAAAGGAATACAAATCTGTTATACATGGAGATCAGCAACAACGAAATCAACGGGTCAATTCCATCCAGTTTAGGAAACTGCACGAATCTCACGGATTTAATGTTGTCCGCGAACAAACTTAGCGGCCGTATACCACCGGAGTTGGGAAGACTTGTTAATCTTCGGACGCTGGATTTCAGTCATAATAACTTAGAAGGTCCTTTACCTTTTCAGCTCTCAAACTGTACCAAAATGGACAAGTTTGATGTGGGATTTAACTTCCTGAATGGTTCATTGCCGTCGAGTTTGCAGAAGTGGACAAGGCTAAACACACTACTTTTGAATGAGAATCGTTTTAGTGGCGGCATTCCAGAGTTCTTGTCGGCTTTTAAAGATCTTTCTGAACTACAGCTTGGCGGAAATATGTTTGGAGGGAAAATTCCTACCTCGGTTGGGACGTTGCAGAATTTGATCTACGGGTTGAATCTAAGTTCTAATGGCCTGATAGGAGACATACCTGTGGAAATTGGAAAACTGAAAAGTCTACAAATGATGGATCTTTCTCGGAACAATTTGACAGGAAGCATACAAGTTCTTGACGAACTCCTTTCGTTAGTCGAAATCAATCTTTTGAACAATTCTTTTCAGGGTCCCATACCGAAGATGCTCATGAAGCGGTTTAATTCTCAACTGTCATCATTTTCGGGGAATCCCGGGCTATGTATCAGTTGTTCACCATCCAGTGGCTTGGTTTGCAACGAAAGCAGCCATGTAAACCCATGTAACAACAACAAACCTATGAATAACAAAGGCCTCGGTAAAATTGCAATTGTGATGATAGCGCAAGTCCATATTACTGATAATGGAGGTACTTCGTCCCTTCTTAACAAAGTTATGGAGGCTACATCGAACCTAAGTGATCGGTATATTATCGGAAGAGGAGCCCATGGAGTTGTTTATAAAGCCCGTGTAAGCCAAGACAAAGCTTTTGCCGTAAAGAAGCTAGCATTTGCTGCTAGCAAAGGTAAGAACTTGAGCATGGTTAGAGAAATTCAAACCCTTGGACAAATTAAGCATCGAAATCTTGTGAAATTGGAAAACTTTTGGTTGAGACAAGATTACGGTCTAATTTTGTATAGCTACATGCCAAATGGAAGCCTCTATGATGTCTTGCATGAAAAGGAGCCAGCACCGTCTTTAGAGTGGAACGTTCGGTATAAGATAGCTATTGGAATTGCTCATGGATTGAATTACCTCCATTATGACTGCGATCCTCCCATAGTGCACCGAGACATCAAACCAAACAACATACTTCTAGACTCGGATATGGAGCCTCACATTGCAGACTTTGGTATTGCCAAAGTTTTGGACCAGTCCTCTACATCGAATTCTTCGTTATCTGTGCCTGGCACAATCGGTTATATTGCACCAGAGAATGCTTATACAACAGTAAGTAGTAGGGAGTGTGATGTGTACAGCTATGGAGTAGTTTTACTTGAGCTGATAACGAGAAAGAAGGTAGTCGATCCATCGTTTACGGAGGGTACTGATTTAGTGAGTTGGGTTAGATTGTTGTGGAGTGAAACAGAAGAAATTAGTCAAATTGTTGATTCAAGCCTTGCAAATGAGTGTCTAGATACCAATATAATGGAAAATGTTACCGAAGTTCTTATGGTGGCTTTGAGATGTGTTGAGAATGATCCACACAAGAGGCCAAAAATGACAGATGTTACTAAGCAGTTATCAGATTCTAATCCACAGAAAAAAAAAGTAAGAAGGGCTAGATTTGTAAAAGATATCTAA 3192 0.3988 MKLHSSLLFFHVFFQFYTLSATLNSDGLALLSFKSHWTSLPPLINSTWIPSHSTPCSWAGLKCNSFHRVISLNLSYLDIYGQLGPEVANCTQLQHLDLSYNYFNGQIPYSFTNLHKLKYLDLSVNLLNAPFPHFLSQIPHLKLLDLSYNQLHGSISTTIANMTHLQELYLKFNNLSGAIPSSIGNCTQLQDLYLNDNQLEGVLPYSLNNLNHLLNFDVANNKLTGAIPLCFSGCRNLQFLDISFNDFGSGLPYSIGNCTALSQFAAVKSNLVGAIPSSIGLLTELSILRLSENHLSGKIPSEIGNCESLTELHLYSNRLDGNIPSEMGKLGELRDLELFSNQLSGEIPLEIWKIRHLKHLFVYNNSLSGELPVEMTELKNLKNISLFNNMFSGVIPQSLGINSSLVQLDFVNNRFTGNLPPNLCFGRNLSVLNMGINRFRGRIPPDVGRCTTLRRIILKQNKFTGPLPDFERNTNLLYMEISNNEINGSIPSSLGNCTNLTDLMLSANKLSGRIPPELGRLVNLRTLDFSHNNLEGPLPFQLSNCTKMDKFDVGFNFLNGSLPSSLQKWTRLNTLLLNENRFSGGIPEFLSAFKDLSELQLGGNMFGGKIPTSVGTLQNLIYGLNLSSNGLIGDIPVEIGKLKSLQMMDLSRNNLTGSIQVLDELLSLVEINLLNNSFQGPIPKMLMKRFNSQLSSFSGNPGLCISCSPSSGLVCNESSHVNPCNNNKPMNNKGLGKIAIVMIAQVHITDNGGTSSLLNKVMEATSNLSDRYIIGRGAHGVVYKARVSQDKAFAVKKLAFAASKGKNLSMVREIQTLGQIKHRNLVKLENFWLRQDYGLILYSYMPNGSLYDVLHEKEPAPSLEWNVRYKIAIGIAHGLNYLHYDCDPPIVHRDIKPNNILLDSDMEPHIADFGIAKVLDQSSTSNSSLSVPGTIGYIAPENAYTTVSSRECDVYSYGVVLLELITRKKVVDPSFTEGTDLVSWVRLLWSETEEISQIVDSSLANECLDTNIMENVTEVLMVALRCVENDPHKRPKMTDVTKQLSDSNPQKKKVRRARFVKDI 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00524 1063 SUPERFAMILY Protein kinase-like (PK-like) 757 1044 IPR011009 -
Vifa4g00524 1063 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 534 1044 - -
Vifa4g00524 1063 Gene3D Phosphorylase Kinase; domain 1 745 844 - -
Vifa4g00524 1063 Pfam Leucine rich repeat 188 247 IPR001611 GO:0005515
Vifa4g00524 1063 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515
Vifa4g00524 1063 ProSiteProfiles Protein kinase domain profile. 768 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00524 1063 ProSitePatterns Protein kinases ATP-binding region signature. 774 797 IPR017441 GO:0005524
Vifa4g00524 1063 Gene3D Ribonuclease Inhibitor 406 712 IPR032675 -
Vifa4g00524 1063 Gene3D Transferase(Phosphotransferase) domain 1 845 1061 - -
Vifa4g00524 1063 FunFam Serine/threonine-protein kinase-like protein CCR4 845 1061 - -
Vifa4g00524 1063 SMART serkin_6 768 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00524 1063 SUPERFAMILY RNI-like 348 699 - -
Vifa4g00524 1063 Gene3D Ribonuclease Inhibitor 272 330 IPR032675 -
Vifa4g00524 1063 Gene3D Ribonuclease Inhibitor 331 405 IPR032675 -
Vifa4g00524 1063 ProSitePatterns Serine/Threonine protein kinases active-site signature. 890 902 IPR008271 GO:0004672|GO:0006468
Vifa4g00524 1063 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 737 844 - -
Vifa4g00524 1063 SUPERFAMILY RNI-like 71 423 - -
Vifa4g00524 1063 Pfam Protein kinase domain 773 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00524 1063 Gene3D Ribonuclease Inhibitor 23 177 IPR032675 -
Vifa4g00524 1063 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 240 323 - -
Vifa4g00524 1063 Gene3D Ribonuclease Inhibitor 178 271 IPR032675 -
Vifa4g00524 1063 SMART LRR_typ_2 282 306 IPR003591 -
Vifa4g00524 1063 SMART LRR_typ_2 162 186 IPR003591 -
Vifa4g00524 1063 SMART LRR_typ_2 642 668 IPR003591 -
Vifa4g00524 1063 SMART LRR_typ_2 330 354 IPR003591 -
Vifa4g00524 1063 SMART LRR_typ_2 187 209 IPR003591 -
Vifa4g00524 1063 SMART LRR_typ_2 138 161 IPR003591 -
Vifa4g00524 1063 SMART LRR_typ_2 521 545 IPR003591 -
Vifa4g00524 1063 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Vifa4g00524 1063 FunFam Leucine-rich repeat receptor-like protein kinase 23 181 - -
Vifa4g00524 1063 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 427 713 - -
Vifa4g00524 1063 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 325 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00524 Vifa-Chr4 144309659 144313026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00524 21 1046 Receptor kinase-like Gene Family AT1G73080 49.402 0.0 1001
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa4g00524 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00524 - - gmx:100778035 1405.96