Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00518 ATGATGTCTGATGAATCACAGAGAGTTGTGGTGATCCACCATGCATCTAGTGACTTAAGTACAAAAGCACTTAAATGGGCTATCAATGGCTTTTCACTTGATCATGGAGATACCCTTACACTTGTTGCAATTATTCGCCATGTAAATAGTCCAACTAGTGCCCGATTTCGTGCAATATTTGGTAATGATCAGAACATTGTTGAGGAAGAAGTTGCTAAGAAGAAAGAAAAACTGCATAATCATCCATCCATCATGAAAGTTTCTGAGCAGTGTGAAAAACACAAGATTCGGTTCTTGATAGAAGTACTTCCGGGCAAGTTACCGGAGCATGCTATAAATGCGGCCGTCCGATTGAAAGCAACATCGGTTATACTTGATAGAGATATGAAGAAATATAAGAAGGATTTCATGGAGAGTCTCTCTTGTGCTTTACTAATAATGAAAAGTGGTAACTCCATTAAGCACTTGAGAGGGCCAAGGAAAACAAACATTTCTTTTACAGGATATAACAATTCAGGTCCTGAATTCTCACCGAGTTTGTGGAGCATGACAAACGCGGTTTTCCGTTCAAAATCGAGCTCTAATCTAACGAAAATTGTCTGTCATCAATTTCATTGTCAAACAAAACAAACGCCCGAAGATAAAGATCTAGATATGGCACGAGGTTATTGCCTATTACCGATTCCTGATAATCAAAAGACTAGTGTTCTTGAAATGTTTCCTAAGGAGACAGCATTTGAACATATCAGAAACCATAGAACATATCAAATAGTTGAAAAGTTCAAGAATTCTGTTTGCAAAGTGTGTGAGAACAAAAGGCCGAAATTTGAGCTGATGAAAGAATTCACATATGTGGAGCTGCATGAAGCAACGCATGGTTTTTCGCTGAAGAATTTTTTATCGGAAGGTGGATTTGGTTCGGTTTATTGGGGAAAGATGCAAGGACTCAAGATTGCTGTTAAGAAACATAAGTTTGCAAGTCTTCAAGGAGAGAAGGAATTCAAATCTGAAGTTAATGCACTAAGTAAAGCAATACATGAAAATGTGGTCATGCTGCTAGGTTCTTGTTCCGAGGGAAATAACAGATTTCTTGTATACGAATTTGTTTGCAATGGTTCACTTGATCAACATTTATCGGAACACTCGAGAAAGCCTCTTACTTGGCCAGACAGGATCAAAGTAGCTATTGGAGCTGCAAAAGGCTTATTGTATTTGCATGAGAATAACATAATACATAGAGATGTGAGACCGAGTAACATTCTTGTCACACATGATTATGAAGCAATGCTGGGAGATTTTGGTCTGGCTCGAACGGAACAAATGGATTCAGTGTACTCAACAGATGTTGTTGGAACTTTAGGATATATGGCACCAGAATATGCAGAATCTGGTAAAGTATCAACCAAATCAGATGTGTATTCTTTTGGCGTTGTGCTTCTTCAGCTTATAACAGGAATGAGGACCACAGACAAAAAGATCGGGCACAAAAGTCTTGTGGGATGGGCTAGGCCATTGCTAAAGGAAAGGAACTATCCAGATCTAATTGATGAAAGGATGATGGATACCTATGATTGCCATCAGCTTTTTTGGATGATTCGTTTAGCCGAAAAATGTCTCACCAGGGATCCTCAGAAGCGATTACCAATGGATACAGTGGTTAGTGCATTAACTCATATAGTAGAAGGCAGCACATGTAGCATGGTACTGAGAGACTGTTCTCCAGCACGGTCTGATTCATCTTATGACATGTCAGAATCTCCTATGTCAGGTGTCTCACCAGAATCAGAAGATGAAGAAGATGGAATTGTCTGTGTAGGATGCAACACACTTAACTTGCGACCTCCACCATCTCCTCCATTAGGAAGCACTTCATGGAGTAGTACATCAAGCACATGTGTTCACATGGCTGAATGA 1914 0.3955 MMSDESQRVVVIHHASSDLSTKALKWAINGFSLDHGDTLTLVAIIRHVNSPTSARFRAIFGNDQNIVEEEVAKKKEKLHNHPSIMKVSEQCEKHKIRFLIEVLPGKLPEHAINAAVRLKATSVILDRDMKKYKKDFMESLSCALLIMKSGNSIKHLRGPRKTNISFTGYNNSGPEFSPSLWSMTNAVFRSKSSSNLTKIVCHQFHCQTKQTPEDKDLDMARGYCLLPIPDNQKTSVLEMFPKETAFEHIRNHRTYQIVEKFKNSVCKVCENKRPKFELMKEFTYVELHEATHGFSLKNFLSEGGFGSVYWGKMQGLKIAVKKHKFASLQGEKEFKSEVNALSKAIHENVVMLLGSCSEGNNRFLVYEFVCNGSLDQHLSEHSRKPLTWPDRIKVAIGAAKGLLYLHENNIIHRDVRPSNILVTHDYEAMLGDFGLARTEQMDSVYSTDVVGTLGYMAPEYAESGKVSTKSDVYSFGVVLLQLITGMRTTDKKIGHKSLVGWARPLLKERNYPDLIDERMMDTYDCHQLFWMIRLAEKCLTRDPQKRLPMDTVVSALTHIVEGSTCSMVLRDCSPARSDSSYDMSESPMSGVSPESEDEEDGIVCVGCNTLNLRPPPSPPLGSTSWSSTSSTCVHMAE 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00518 637 MobiDBLite consensus disorder prediction 614 637 - -
Vifa4g00518 637 Gene3D HUPs 1 145 IPR014729 -
Vifa4g00518 637 MobiDBLite consensus disorder prediction 577 591 - -
Vifa4g00518 637 FunFam Proline-rich receptor-like protein kinase PERK8 256 368 - -
Vifa4g00518 637 MobiDBLite consensus disorder prediction 622 637 - -
Vifa4g00518 637 ProSitePatterns Tyrosine protein kinases specific active-site signature. 410 422 IPR008266 GO:0004672|GO:0006468
Vifa4g00518 637 Gene3D Phosphorylase Kinase; domain 1 265 368 - -
Vifa4g00518 637 SMART tyrkin_6 294 556 IPR020635 GO:0004713|GO:0006468
Vifa4g00518 637 MobiDBLite consensus disorder prediction 576 599 - -
Vifa4g00518 637 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 369 571 - -
Vifa4g00518 637 Gene3D Transferase(Phosphotransferase) domain 1 369 571 - -
Vifa4g00518 637 Pfam Protein tyrosine and serine/threonine kinase 296 556 IPR001245 GO:0004672|GO:0006468
Vifa4g00518 637 PANTHER OS01G0253100 PROTEIN 214 561 - -
Vifa4g00518 637 ProSiteProfiles Protein kinase domain profile. 294 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00518 637 SUPERFAMILY Protein kinase-like (PK-like) 279 572 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00518 Vifa-Chr4 143648184 143651309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00518 215 570 Trihelix Transcription Factor Family AT5G38560 39.892 2.49e-77 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vifa4g00518 PK_Tyr_Ser-Thr 4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00518 - - lsv:128129542 1021.15