Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00515 ATGGAAGAAAACAACAATAACACCGTTCATGCTTCAGATTCAGTTGATAAATCTAGGATTGTTGAAGCCAAACCCTTGCGTAGTTTAGCTCCTGTATTGCCAAACCATATTCAGTCTTGTTTTCCTGCAAATTATCCATCTGGGTTTCCTCCATTTTGTTCATTTGAGAAACCCCGAGAAATTCCTATTCCAAAAGGAGTTGAGGAAATTGCTGTTGATGCCAAAACAGCTGAGGAAATTCCCGGTTCCGCGAAAGAAACTCCTGTTGCTGCTAATGTGACTCCAATAAGGTTCTACAAGAGTTCGGTTGACGAGGAAGTGAATCCACGAGGGGGCGGAGATGTTAATTCGTTTTCGAAAGGGTTGAATTGCGATGAGTTTGTTGATGATAGAGTGAAGCGAGGTGCGCAGAATATACAGAATTGTAAAGAGTTTCTTAAGAGGAAGAAGAATAAAAAAACTCGGGAGGCTGGCGTAGATGGTCAAAGTTCTAGTGTTGGTGTTAACCCGTCTCTAAATGACGATGGTAATCATGAATCGGTTAATCATGTGCTCATGACGTTTGATTCGGTTCGAAGAAGGTTATGCCAGCTTGAAGATTCAAAGGAACTGAATAGTTCGCTTTCCATCAAGCGTGCGGATCTCAGAGCAAGCAATAGTTTGACGTTGAAAGGGGTTAAAACGAATTTGAGGAGAAGAGCGGGAGCGGTGCCTGGGATTGAGGTTGGGGATATTTTCTTTTTTCGAATGGAAATGTGTCTTGTGGGTTTGCATGGTCAATCGATGGGTGGAATTGATTACATGAGCATCAAGGACGGGTCTAAGGAGGATACTGTGGCGTTAAGTGTTGTTTCATCGGGAGTGTATGGTGATGATACGGAGGATAATGATGTTTTAGTTTATAGTGGTCAAGGTGAGAATTTCAACAAGAAAGATAAGCATGTGACTGATCAGAAGCTCCAAAGGGGTAATCTTGCTTTGGACAGAAGTGCGCAACGACACGACGAAGTTAGAGTCATTCGGGGATTGAGAGATGCTACGAATAGAAGTGCAAAAATCTATATGTATGATGGTTTGTATAAAATCCAAGATTCTTGGATTGAAAGAGGGAAATCTGGCGGTGGTATATTTAAGTATAAGTTGGTAAGGTTGCCTGGACAAAAAAGTGCTTTTGCTGCTTGGAAATTGATTCAAAAGTGGAAATCAGGTTCTGCTTCAAGGAATGGTTTTATTCTAGCTGACCTCTCCAATGGAGTTGAAAGCATTCCAGTATCACTTGTCAATGATGTTGATGATGAAAGAGGTCCTGCCTTTTTCACTTATTTCATGTCTCTGACAAAACCGAAACCTTTTGGTTTAGTGCAGCCTTCGCTTGGCTGCAATTGTAAAGCATCATGCCTCCCTGGTGATTTGAACTGTTCTTGCATTCAAAGAAATGAAGGTGATTTTCCGTACACTGCAAATAGTATTCTAGTGAGTCGGAAGCCGCTGATTCATGAATGCGGCACTATGTGTCGGTGTCTTCCTAACTGCAAAAATCGAGTATCGCAGACTGGTTTAAAGCAACACGTGGAAGTTTTCAAAACAAGGGATAGGGGCTGGGGGCTTCGGACACTGGATCCTATTCGTGCTGGTAGCTTTATTTGCGAGTATGCAGGCGAAGTTATTGACAGAGCTAAAGTATGTCAGAATGATGAAGGAGATAATGATGAATATATTTTCGACACAAGTCGTATTTATCAACCATTCAAGTGGAATCATGACCATGGCTTACTGGGAGATGGAAGTTCAAATGTTTCAAGTGAGGATTATACTATACCATCTCCTCTCATTATAAGTGCCAAGAATGTGGGAAATGTGGGTAGATTCATGAACCATAGTTGCTCCCCGAATGTGTTTTGGCAGCCAGTCCTATATGCGGAAAACAATCAATCCTTTCTCCACATTGCGTTTTTTGCCCTTAAACATATTCCTCCTATGGCAGAGTTAACATATGATTATGGATTTGTCCTTGCTGGTCATGCCGAGGGTAGTAGTGCACACAGAAGGAAAATGAAATGCTTGTGTGAATCACCAAAGTGCCGTGGTTTCTTTGGTTAA 2100 0.4176 MEENNNNTVHASDSVDKSRIVEAKPLRSLAPVLPNHIQSCFPANYPSGFPPFCSFEKPREIPIPKGVEEIAVDAKTAEEIPGSAKETPVAANVTPIRFYKSSVDEEVNPRGGGDVNSFSKGLNCDEFVDDRVKRGAQNIQNCKEFLKRKKNKKTREAGVDGQSSSVGVNPSLNDDGNHESVNHVLMTFDSVRRRLCQLEDSKELNSSLSIKRADLRASNSLTLKGVKTNLRRRAGAVPGIEVGDIFFFRMEMCLVGLHGQSMGGIDYMSIKDGSKEDTVALSVVSSGVYGDDTEDNDVLVYSGQGENFNKKDKHVTDQKLQRGNLALDRSAQRHDEVRVIRGLRDATNRSAKIYMYDGLYKIQDSWIERGKSGGGIFKYKLVRLPGQKSAFAAWKLIQKWKSGSASRNGFILADLSNGVESIPVSLVNDVDDERGPAFFTYFMSLTKPKPFGLVQPSLGCNCKASCLPGDLNCSCIQRNEGDFPYTANSILVSRKPLIHECGTMCRCLPNCKNRVSQTGLKQHVEVFKTRDRGWGLRTLDPIRAGSFICEYAGEVIDRAKVCQNDEGDNDEYIFDTSRIYQPFKWNHDHGLLGDGSSNVSSEDYTIPSPLIISAKNVGNVGRFMNHSCSPNVFWQPVLYAENNQSFLHIAFFALKHIPPMAELTYDYGFVLAGHAEGSSAHRRKMKCLCESPKCRGFFG 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00515 699 Gene3D SET domain 404 698 IPR046341 -
Vifa4g00515 699 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 85 699 IPR025794 GO:0016571
Vifa4g00515 699 ProSiteProfiles Pre-SET domain profile. 458 519 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa4g00515 699 SMART set_7 522 674 IPR001214 GO:0005515
Vifa4g00515 699 MobiDBLite consensus disorder prediction 150 176 - -
Vifa4g00515 699 Pfam SAD/SRA domain 234 387 IPR003105 -
Vifa4g00515 699 SMART preset_2 412 506 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa4g00515 699 Pfam Pre-SET motif 416 514 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa4g00515 699 ProSiteProfiles SET domain profile. 522 668 IPR001214 GO:0005515
Vifa4g00515 699 ProSiteProfiles Post-SET domain profile. 683 699 IPR003616 -
Vifa4g00515 699 SUPERFAMILY PUA domain-like 221 404 IPR015947 -
Vifa4g00515 699 SUPERFAMILY SET domain 421 696 IPR046341 -
Vifa4g00515 699 Gene3D - 218 400 IPR036987 -
Vifa4g00515 699 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 134 692 - -
Vifa4g00515 699 ProSiteProfiles YDG domain profile. 235 383 IPR003105 -
Vifa4g00515 699 Pfam SET domain 533 668 IPR001214 GO:0005515
Vifa4g00515 699 MobiDBLite consensus disorder prediction 158 176 - -
Vifa4g00515 699 SMART G9a_1 230 387 IPR003105 -
Vifa4g00515 699 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 218 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00515 Vifa-Chr4 142280411 142282510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00515 7 699 Su(var)3-9 homologs AT1G73100 48.429 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa4g00515 SAD_SRA 1.1e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00515 K24405 - gmx:100800651 936.791