Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00510 ATGTTAACTCCATCAAAAATATTCTTCATAATTCCCTTTCTCTCCGTTTTCCTTCTCTTACCATTACTCCTCCTAGCTCATGAAGCACCATCTCCTCCTCCTCCTCCTTCTCCTTCTCCTTCTCCTTCTAATGCATGCAAATCAACACTATACCCGAAACTATGTCGTTCCATTCTCTCTTCGATCCGTTCCTCTCCGACCGACCCCTACCACTTAGGCAAATTCTCAATAAAACAAAGCCTAAAACAAGCCAAAAGGCTATCCAAAGTATTCAAAGACTTCCTCAAAAGCCATCACCAATCATCTCCCCTTAACCACGCCGAGTTCGCGGCCCTAGACGATTGTCGCGAACTAAACCAACTTAACGTAGACTACTTAGAGTTAGTAAAAGACGAACTTAAATCAGCCGATTCATCATCTTTCAATAACACCGATGTGTTGGTGGAAAAAGTTGAAACTTATCTTAGTGCCGTGGCTACAAATCACTATACTTGTTACGACGGTTTGGTTGTGACGAAAAGTAACATTGCTAATTCTTTCGCTGTTCCTTTGAGTAATGTTACGCAATTGTATAGTGTTTCACTTGGGTTGGCTATGCAGGCTTTGAATAAAAATATTAAGAAACGTAAGACTCGTAAACATGGTCTTCCTACTAAGACTTTTAAGGTCAGACAGCCACTTCAAAAGCTCATTAAGCTTCTTAGAACAAAATTCAGTTGCAACAAATCATCCAACTGTACAAGAACCGAAAGGATTATAGAAGAAAGTGAAAACAAAGGAATTCTACTCAAAGAATATGTTATTGTAAGCCTTGATGGAAGTGAAAACTTTACTTCAATTGGTGAAGCTATTGATGCTACACCTGATAATCTAAAGCCACAAGATGGCTATTTTCTTATCTATGCCAAACAAGGATTATATCATGAATATCTCACTGTTCCGAAAAATAAGAAGAATATCTTACTTATTGGTGATGGTATTAACAACACTTGCATCACAGGAAATCATAGTGTTGTTGATGGTTGGACAACTTTTAATTCCTCAACCTTTGCTGTATCTGGAGAGAGATTTATAGCAGTGGACGTAACATTCAGAAACACAGCAGGACCAGAAAAGCATCAAGCAGTAGCAGTAAGAAACAACGCAGATCTTTCGATATTCTACCGATGCAGTTTCGAAGGATACCAAGACACACTCTATGTTCACTCCCTAAGACAATTCTACCGAGAATGTGATATCTACGGCACAGTTGATTTCATATTCGGAAACGCGGCTGCAGTACTTCAAAGCTGTAACATCTACGCAAGAAAACCGATGAAAAATCAGAAGAATGCTGTAACGGCACAAGGAAGAACTGATCCAAATCAAAACACAGGAATCTCAATACAAAATTGTAGGATTGATGCGGCGCCAGACTTAGCGGAAGATATGAATTCGACTAAGAATTATTTGGGAAGACCATGGAAAGTTTATTCAAGGACTGTTTATTTGCAGTCATATATTGGTGATTTGATTCAACCTTCTGGATGGTTAGAGTGGAATGGAACAGTTGGATTGGATACACTATTTTATGGTGAGTTTGATAATCATGGACCTGGTTCTATGACCAATAATAGGGTTCAATGGCATGGTTATAATTTGTTGACTCCTAATCAAGCTTGGAATTTCACTGTCCTTAATTTTACTTTGGGGAATACTTGGATTCCTGATACTGATGTACCTTACACTCAAGGACTAAAATTAGATAATTGA 1752 0.3847 MLTPSKIFFIIPFLSVFLLLPLLLLAHEAPSPPPPPSPSPSPSNACKSTLYPKLCRSILSSIRSSPTDPYHLGKFSIKQSLKQAKRLSKVFKDFLKSHHQSSPLNHAEFAALDDCRELNQLNVDYLELVKDELKSADSSSFNNTDVLVEKVETYLSAVATNHYTCYDGLVVTKSNIANSFAVPLSNVTQLYSVSLGLAMQALNKNIKKRKTRKHGLPTKTFKVRQPLQKLIKLLRTKFSCNKSSNCTRTERIIEESENKGILLKEYVIVSLDGSENFTSIGEAIDATPDNLKPQDGYFLIYAKQGLYHEYLTVPKNKKNILLIGDGINNTCITGNHSVVDGWTTFNSSTFAVSGERFIAVDVTFRNTAGPEKHQAVAVRNNADLSIFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVLQSCNIYARKPMKNQKNAVTAQGRTDPNQNTGISIQNCRIDAAPDLAEDMNSTKNYLGRPWKVYSRTVYLQSYIGDLIQPSGWLEWNGTVGLDTLFYGEFDNHGPGSMTNNRVQWHGYNLLTPNQAWNFTVLNFTLGNTWIPDTDVPYTQGLKLDN 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00510 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 200 IPR035513 -
Vifa4g00510 583 Pfam Pectinesterase 267 564 IPR000070 GO:0030599|GO:0042545
Vifa4g00510 583 NCBIfam pectinesterase inhibitor domain 14 197 IPR006501 GO:0004857
Vifa4g00510 583 PANTHER PECTINESTERASE 19 571 - -
Vifa4g00510 583 Gene3D - 265 581 IPR012334 -
Vifa4g00510 583 CDD PMEI-like_3 45 208 - -
Vifa4g00510 583 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Vifa4g00510 583 FunFam Pectinesterase 261 579 - -
Vifa4g00510 583 SMART PMEI_2 37 197 IPR006501 GO:0004857
Vifa4g00510 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 197 IPR035513 -
Vifa4g00510 583 SUPERFAMILY Pectin lyase-like 264 578 IPR011050 -
Vifa4g00510 583 Pfam Plant invertase/pectin methylesterase inhibitor 43 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00510 Vifa-Chr4 140925108 140927210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00510 13 579 Carbohydrate Esterase AT3G10720 56.557 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00510 K01051 - gmx:100808277 887.486