Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00496 ATGGGGATCCAAACAATGGGGTCTCAAGGAGGTGGAGATGGTAATGGAAAACGATCGCAACTCCAACCACTTGTGCGGCAAAATTCGGTATACAGTCTCACACTTGACGAGGTTGAAAATCAGTTAGGTGATTTGGGAAAGCCACTAAGTAGTATGAACCTAGATGAGCTTCTTAAAAATGTATGGACTGTTGAGGTGAATCAGTCGACGAGTTCGGACAATGAAGGCGCAGCACAAGCTAGTGAAGCTTCTCTACAACGTCAAGCTAGTATGTCGTTCAAAGCTGCGTTAAGCAAGAAGACTGTGGATGAGGTTTGGAGAGATATCCAACAAAAGAAAGACAGTGACGAGAAGAAGTCGCAGGAGAGACAAACTACTTTAGGAGAGATGACATTGGAGGATTTCTTGGTGAAAGCGGGCATTGTTGCTGGAGCGCCTTCTAATAAAACGAATACCGATACTACCGCTGGAATGGATTCAAATGCAGCACTATCACAATTTCCGCAATCGCAAGGTCAGTGGATTCAGTATCCGCAATCGCAACCACAATTTCAGCAGCATCTACAACATAGTCCAATGGGGGTTTATATGGCTAGCCAGGGTATGGCACAGCCGTTACACATGGGGGTTGGTGCTTCGATGGAGATTCCATTTGCAGATAGTCATATGGCACTGGCTGCACCTCTTATGGGAACTGTGTCGGATACACAGATTTCCGGAATGAAAAGGAGCGCTCCTGAGGATATGGTAGAGAAAACTGTTGAGAGAAGGCAGAAAAGGATGATCAAGAATCGGGAATCCGCTGCCCGTTCAAGAGCAAGGAAACAGGCCTACACAAATGAATTGGAGAACAAAGTTTCGCGCCTGGAAGAGGAAAATGAAATGCTGAGGAAACGAAAGGAGCTAGAGAATATGTTGCCATGCGTACCAATTACCGAGCCTAAATACCAGTTGCGCCGAATAGCATCTTCTCCATTCTGA 981 0.4587 MGIQTMGSQGGGDGNGKRSQLQPLVRQNSVYSLTLDEVENQLGDLGKPLSSMNLDELLKNVWTVEVNQSTSSDNEGAAQASEASLQRQASMSFKAALSKKTVDEVWRDIQQKKDSDEKKSQERQTTLGEMTLEDFLVKAGIVAGAPSNKTNTDTTAGMDSNAALSQFPQSQGQWIQYPQSQPQFQQHLQHSPMGVYMASQGMAQPLHMGVGASMEIPFADSHMALAAPLMGTVSDTQISGMKRSAPEDMVEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENEMLRKRKELENMLPCVPITEPKYQLRRIASSPF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00496 326 CDD bZIP_plant_BZIP46 256 302 - -
Vifa4g00496 326 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 254 306 - -
Vifa4g00496 326 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 259 274 IPR004827 GO:0003700|GO:0006355
Vifa4g00496 326 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 254 299 IPR004827 GO:0003700|GO:0006355
Vifa4g00496 326 SUPERFAMILY Leucine zipper domain 256 301 IPR046347 GO:0003700|GO:0006355
Vifa4g00496 326 MobiDBLite consensus disorder prediction 1 23 - -
Vifa4g00496 326 Coils Coil 272 306 - -
Vifa4g00496 326 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 25 321 IPR043452 GO:0003700|GO:0045893
Vifa4g00496 326 Gene3D - 254 307 - -
Vifa4g00496 326 SMART brlzneu 252 324 IPR004827 GO:0003700|GO:0006355
Vifa4g00496 326 Pfam bZIP transcription factor 256 300 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00496 Vifa-Chr4 137272620 137273926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00496 22 326 bZIP Transcription Factor Family AT3G56850 50.938 1.22e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa4g00496 bZIP_1 1.6e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00496 K14432 - gmx:100101875 447.973