Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00494 ATGGGATATGGAACAAGAAAACTCTTAGATGAATATGAAGTTTCAGAAATTCTAGGAAGAGGTGGATTTTCTGTTGTTAGAAAAGGTACAAGAAGATCAAACAATGATGATGAAAAATCACAATCACAAGTAGCAATCAAAACACTTAGAAGATTAGATACTTCAAATAATTTAGCAAGGAAAAGAGATGGTGGTGAAAAAAGCACACAGGTTATGATGAATTTCCCTACAATGAGACAAGTTTCTGTCTCAGACGCATTACTAACAAATGAGATACTTGTAATGAGAAGAATAGTCGAAAACATTTCGCCGCATCCGAACGTTATTGATCTTTATGATGTTTACGAAGACACAAATGGTGTTCATCTTGTGCTTGAGCTTTGTTCGGGCGGAGAACTTTTCGATAGGATTGTTGCACAAGATAAGTATAGTGAGACCGAGGCTGCAACTGTGGTTCATCAGATTGTAGCAGGGTTAGAAGCTATTCATAAGGCTAACATTATTCATAGGGATTTGAAGCCTGAGAATTGTCTTTTTTTAGATGTTGGGAAAGATTCTAGTCTTAAGATTATGGATTTTGGGTTGAGTTCTGTTGAAGAGTTTACTGATCCTGTTGTTGGCTTATTTGGATCTATTGATTATGTTTCACCTGAGGCTCTTTCTCAAGGAAAGATTACTACTAAAAGTGATATGTGGTCTCTTGGAGTTATTCTATATATCTTACTTTCGGGGTATCCACCTTTCATTGCTCAAAATAATCGCCAAAAACAACAAATGATTTTGAATGGAAATTTTAGTTTTTATGAGAAGACTTGGAAGGGAATTTCACAATCAGCAAAGAACTTGATTTCAAGTCTACTAACTGTTGATCCTGATAAAAGACCTAGTGCTCAAGAGCTTCTAAGTGATCCTTGGGTGAAAGGTGAAAAAGCCAAAGATGATCAAATGGACCCTGAGATTGTGTCAAGGCTACAAAGATTCAATGCAAGACGCAAACTTCGCGCAGCTGCGATAGCTAGTGTTTGGAGCTCCACAATATTCTTAAGAACTAAAAGATTGAGATCATTGGTTGGATCATATGATCTCAAAGAAGACGAAATCGAAAATCTCAAGATACATTTCAAGAAAATATGTGCTGATAGAGAAAATGCGACTCTTAGTGAGTTTGAGGAGGTGTTAAAAGTAATGAAAATGCCATCATTGATCCCTTTTGCAGCTCGGATATTTGATTTGTTTGACAACAACCGCGATGGAACAGTTGATATGAGAGAGATTCTTTGTGGCTTTTCGAGTCTCAAGAATTCCAAAGGAGAAGATGCTCTCCGTTTGTGCTTCCAGATGTATGACACAGATAGATCAGGATGCATAAGCAAGGAAGAAGTAGCATATATGCTAAGAGCTTTGCCATATGATTGTCTTCCAACTGATATCACTGAACCTGGAAAACTGGATGAGATTTTCGACTTGATGGATGCCAATAGTGATGGAAAAGTTACTTTTGATGAATTCAAATCTGCTATGCAAAGAGATAGCTCTCTTCAAGATGTAGTTCTCTCTACTCTTCGTCCATTGTAG 1575 0.3708 MGYGTRKLLDEYEVSEILGRGGFSVVRKGTRRSNNDDEKSQSQVAIKTLRRLDTSNNLARKRDGGEKSTQVMMNFPTMRQVSVSDALLTNEILVMRRIVENISPHPNVIDLYDVYEDTNGVHLVLELCSGGELFDRIVAQDKYSETEAATVVHQIVAGLEAIHKANIIHRDLKPENCLFLDVGKDSSLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQNNRQKQQMILNGNFSFYEKTWKGISQSAKNLISSLLTVDPDKRPSAQELLSDPWVKGEKAKDDQMDPEIVSRLQRFNARRKLRAAAIASVWSSTIFLRTKRLRSLVGSYDLKEDEIENLKIHFKKICADRENATLSEFEEVLKVMKMPSLIPFAARIFDLFDNNRDGTVDMREILCGFSSLKNSKGEDALRLCFQMYDTDRSGCISKEEVAYMLRALPYDCLPTDITEPGKLDEIFDLMDANSDGKVTFDEFKSAMQRDSSLQDVVLSTLRPL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00494 524 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Vifa4g00494 524 SUPERFAMILY EF-hand 350 515 IPR011992 -
Vifa4g00494 524 CDD EFh 407 466 IPR002048 GO:0005509
Vifa4g00494 524 Pfam EF hand 408 424 IPR002048 GO:0005509
Vifa4g00494 524 Pfam EF-hand domain pair 439 508 IPR002048 GO:0005509
Vifa4g00494 524 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Vifa4g00494 524 ProSiteProfiles EF-hand calcium-binding domain profile. 478 513 IPR002048 GO:0005509
Vifa4g00494 524 Gene3D Transferase(Phosphotransferase) domain 1 135 349 - -
Vifa4g00494 524 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Vifa4g00494 524 Gene3D - 350 518 - -
Vifa4g00494 524 CDD EFh 441 508 IPR002048 GO:0005509
Vifa4g00494 524 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 349 518 - -
Vifa4g00494 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vifa4g00494 524 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 3 129 - -
Vifa4g00494 524 CDD STKc_CAMK 12 305 - -
Vifa4g00494 524 SMART serkin_6 12 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00494 524 ProSiteProfiles Protein kinase domain profile. 12 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00494 524 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Vifa4g00494 524 SMART efh_1 482 510 IPR002048 GO:0005509
Vifa4g00494 524 SMART efh_1 404 432 IPR002048 GO:0005509
Vifa4g00494 524 SMART efh_1 440 468 IPR002048 GO:0005509
Vifa4g00494 524 PANTHER SERINE/THREONINE-PROTEIN KINASE 9 474 - -
Vifa4g00494 524 SUPERFAMILY Protein kinase-like (PK-like) 6 326 IPR011009 -
Vifa4g00494 524 Pfam Protein kinase domain 12 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00494 524 Gene3D Phosphorylase Kinase; domain 1 5 134 - -
Vifa4g00494 524 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 133 323 - -
Vifa4g00494 524 PRINTS Recoverin family signature 498 518 - -
Vifa4g00494 524 PRINTS Recoverin family signature 408 429 - -
Vifa4g00494 524 PRINTS Recoverin family signature 432 451 - -
Vifa4g00494 524 ProSitePatterns EF-hand calcium-binding domain. 491 503 IPR018247 -
Vifa4g00494 524 ProSitePatterns Protein kinases ATP-binding region signature. 18 47 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00494 Vifa-Chr4 137072980 137075886 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00494 87 511 EF-hand Containing Proteins AT3G10660 37.071 7.61e-78 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Vifa4g00494 Pkinase 9.7e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00494 K13412 - gmx:732616 869.381