Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00492 ATGGGATATAGAACAAGAAAACTCATAGATGAATTTGAAGTTTCAGAAAATCTAGGAAGAGGTGGATTTTCTATTGTTATAAAAGGTACAATAAAATCAAACACTGATGATAAAAAATCACAATCACAAGTAGCAATCAAAACACTCAGAAGATTAAGTACTTCAAATAATTTAGTAAGAAAAAAAGATGGTGGTGAAAAAAGCACACAGACTATGATGAACTTCTCTACAATGAGACAAGTTTCTGTCTCGGATGCATTACTAACAAATGAGATACTTGTAATGAGAAGAATAGTCGAAAACGTTTCGCCGAATCTGAACGTTATTGATCTTTATGATGTTTATGATGTTTATGAAGACACAAATGGTGTTCATCTTGTGCTTGAGCTTTGTTCGGGCGGCGAACTTTTTGATAGGATTGTTGCACAAGATAAGTATAGTGAGACTGAGGCTGCAACTGTGGTTCATCAGATTATAGCAGGGTTAGAAGCTATTCATAAGGCTAACATTATTTATAGGGATTTGAAGCCTGAGAATTGTCTTTTTTTAGATGTTGGGAAAGATTCTAGTCTTAAGATTATGGATTTTGGGTTGAGTTATGTTGAAGAGTTTACTGATCTTGTTGTTGGTTTGTTTGGATCTATTGATTATGTTTCACCTGAGGCTCTTTCTCAAGGAAAGATTACTACTAAAAGTGACATGTGGTCTCTTGGAGTTATTTTATATATCTTGCTTTCTGGGTATCCACCCTTCATTGGTCAAAATAATCGCCAAAAACAACAAATGATATTGAATGGTAATTTTAACCTAGTGCTCAAGAGTTCTAAGTGA 831 0.3394 MGYRTRKLIDEFEVSENLGRGGFSIVIKGTIKSNTDDKKSQSQVAIKTLRRLSTSNNLVRKKDGGEKSTQTMMNFSTMRQVSVSDALLTNEILVMRRIVENVSPNLNVIDLYDVYDVYEDTNGVHLVLELCSGGELFDRIVAQDKYSETEAATVVHQIIAGLEAIHKANIIYRDLKPENCLFLDVGKDSSLKIMDFGLSYVEEFTDLVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIGQNNRQKQQMILNGNFNLVLKSSK 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00492 276 Pfam Protein kinase domain 13 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00492 276 Gene3D Transferase(Phosphotransferase) domain 1 3 275 - -
Vifa4g00492 276 PANTHER SERINE/THREONINE-PROTEIN KINASE 11 269 - -
Vifa4g00492 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Vifa4g00492 276 ProSiteProfiles Protein kinase domain profile. 12 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00492 276 SUPERFAMILY Protein kinase-like (PK-like) 6 266 IPR011009 -
Vifa4g00492 276 SMART serkin_6 12 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00492 276 ProSitePatterns Protein kinases ATP-binding region signature. 18 47 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00492 Vifa-Chr4 136853139 136854809 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00492 51 270 EF-hand Containing Proteins AT5G23580 40.179 9.26e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Vifa4g00492 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00492 K13412 - gmx:732616 405.986